Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq3285 241 2e-61 seq434 123 4e-26 seq3284 122 1e-25 seq3160 114 2e-23 seq2708 114 2e-23 seq892 109 9e-22 seq177 105 1e-20 seq3075 93.3 7e-17 >seq3285 Length=27627 Score = 241 bits (266), Expect = 2e-61 Identities = 225/278 (81%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||||||||||||| |||| |||||| Sbjct 7516 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 7573 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 7574 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 7633 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| |||||| | | || |||| | ||| ||| | ||||||||| |||| | Sbjct 7634 GAACGCGGTGATAC-CGCCCGCACGT-ATAGATGGACAAGAATAGGCTCCGGCTTAGCGT 7691 Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240 |||||||||| | ||| | | ||||||||| | | | | | ||| |||| | Sbjct 7692 CTTAGCAGGCGATCTCTCCGCGGCGC-AGGAAGCGCGTCGTGGT-ATTTCGCGTATTGTA 7749 Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||||| || | || ||| |||||||||||||||||| Sbjct 7750 ATTTCAACACGAGCGGGGTCAAATCCTTTGCAGACGAC 7787 Score = 156 bits (172), Expect = 7e-36 Identities = 203/273 (74%), Gaps = 6/273 (2%) Strand=Plus/Plus Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65 |||| |||||| |||| | ||||||| ||||||||||||||||||| |||||||||||| Sbjct 15905 AGAGAAACCGCT-AATTTA-AATAATTAGTTTTTGCGGCTGTCTGACTAGGCAGTGCCGC 15962 Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125 |||||||| || | || ||| || ||| ||||||||||||| |||||| |||| |||||| Sbjct 15963 GAAGCTACTATTTACTAGATAATAGCTAAACGCCTCTAAGTTAGAATCTATGCTAGAACG 16022 Query 126 GGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAACCTTAG 185 || || | | || | || | ||| |||| ||||||||| || | ||||| Sbjct 16023 CAGTAATAC-CGCCCGTACGT-ATAGATAGATAAGAATAGGCTCTAGCTTAGCGTCTTAG 16080 Query 186 CAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCAATTTC 245 ||||| | ||| | | ||||||||| | | | | | ||| |||| ||||| Sbjct 16081 CAGGCAATCTCTCCGCGGCGC-AGGAAGCGCGTCGTGGT-ATTTCGCGTATTGTAATTTT 16138 Query 246 ACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 | || |||||| |||||||||||||||||| Sbjct 16139 AACACAAGCAGGGTCAAATCCTTTGCAGACGAC 16171 >seq434 Length=12928 Score = 123 bits (136), Expect = 4e-26 Identities = 107/130 (82%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65 |||| |||||| |||| ||| ||||| |||||||||||| ||| || |||||||||||| Sbjct 8295 AGAGAAACCGCT-AATTTAGA-TAATTAGTTTTTGCGGCTATCTAACTAGGCAGTGCCGC 8352 Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125 |||||||| || | || ||| || ||| || |||| ||||| ||||||||||| |||||| Sbjct 8353 GAAGCTACTATTTACTAGATAATAGCTAAATGCCTTTAAGTTAGAATCCATGCTAGAACG 8412 Query 126 GGGTGATTCT 135 ||| || || Sbjct 8413 TGGTAATACT 8422 >seq3284 Length=6720 Score = 122 bits (134), Expect = 1e-25 Identities = 96/114 (84%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 19 AATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCT 78 |||| ||| ||||| |||||| ||||| ||| || |||||||||||||||||||| || | Sbjct 1563 AATTTAGA-TAATTAGTTTTTACGGCTATCTAACTAGGCAGTGCCGCGAAGCTACTATTT 1505 Query 79 GCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGAT 132 || ||| || ||| ||||||||||||| |||||| ||||||||||| ||| || Sbjct 1504 ACTAGATAATAGCTAAACGCCTCTAAGTTAGAATCTATGCCAGAACGCGGTAAT 1451 >seq3160 Length=33358 Score = 114 bits (126), Expect = 2e-23 Identities = 127/164 (77%), Gaps = 4/164 (2%) Strand=Plus/Minus Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65 |||||||| || |||| ||| ||||| |||||||||||| ||| || ||||||||| Sbjct 13922 AGAGGAACTGCT-AATTTAGA-TAATTAGTTTTTGCGGCTATCTAACTAGGCAGTGCTAT 13865 Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125 ||||||| || |||| ||| || ||| || |||||||||| |||||| |||| |||||| Sbjct 13864 AAAGCTACTATTTGCTAGATAATAGCTAAATGCCTCTAAGTTAGAATCTATGCTAGAACG 13805 Query 126 GGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTT 169 || || || | ||||| | ||| |||| |||||||||| Sbjct 13804 TAGTAATACT-GCTTGCACGT-ATAGATAGATAAGAATAGGCTT 13763 Score = 113 bits (124), Expect = 7e-23 Identities = 126/163 (77%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65 ||||||||| | |||| ||| |||||||||||||||||| | | || |||||||||| | Sbjct 2903 AGAGGAACCACT-AATTTAGA-TAATTGGTTTTTGCGGCTATTTAACTAGGCAGTGCCAC 2846 Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125 |||||||| || | || ||| || ||| || |||||||||| ||||| || | |||||| Sbjct 2845 GAAGCTACTATTTACTAGATAATAGCTAAATGCCTCTAAGTTAGAATTTATACTAGAACG 2786 Query 126 GGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCT 168 || || | | || |||| | ||| |||| ||||||||| Sbjct 2785 CAGTAATAC-CGCCCGCACGT-ATAGATAGATAAGAATAGGCT 2745 >seq2708 Length=20175 Score = 114 bits (126), Expect = 2e-23 Identities = 127/164 (77%), Gaps = 4/164 (2%) Strand=Plus/Minus Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65 ||||||||||| |||| | ||||||| ||||||| |||| ||| || ||||| ||||| Sbjct 12022 AGAGGAACCGCT-AATTTA-AATAATTAGTTTTTGTGGCTATCTAACTAGGCAATGCCGT 11965 Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125 ||||||| ||||||| ||| || ||| ||||||||||||| | |||| || | | |||| Sbjct 11964 AAAGCTACTATCTGCTAGATAATAGCTAAACGCCTCTAAGTTAAAATCTATACTAAAACG 11905 Query 126 GGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTT 169 || || || | | ||||| ||| |||| |||||||||| Sbjct 11904 CAGTAATACT-ACTTACACAT-ATAGATAGATAAGAATAGGCTT 11863 >seq892 Length=12392 Score = 109 bits (120), Expect = 9e-22 Identities = 95/117 (81%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 19 AATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCT 78 |||| ||| ||||| |||||| ||||| ||| || ||| |||||| ||||||||| || | Sbjct 6959 AATTTAGA-TAATTAGTTTTTACGGCTATCTAACTAGGTAGTGCCACGAAGCTACTATTT 7017 Query 79 GCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCT 135 || ||| || ||| ||||||||||||| |||||| |||| |||||| ||||| || Sbjct 7018 ACTAGATAATAGCTAAACGCCTCTAAGTTAGAATCTATGCTAGAACGTAGTGATACT 7074 >seq177 Length=8061 Score = 105 bits (116), Expect = 1e-20 Identities = 125/164 (76%), Gaps = 4/164 (2%) Strand=Plus/Minus Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65 ||||||| ||| |||| ||| ||||| |||||| ||||| ||| || ||| ||||| | Sbjct 2809 AGAGGAATCGCT-AATTTAGA-TAATTAGTTTTTACGGCTATCTAACTAGGTAGTGCTAC 2752 Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125 ||||||| ||||||| ||| || ||| ||||||||||||| ||||| || | |||||| Sbjct 2751 AAAGCTACTATCTGCTAGATAATAGCTAAACGCCTCTAAGTTAGAATTTATACTAGAACG 2692 Query 126 GGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTT 169 || || || || |||| | ||| ||| |||||||||| Sbjct 2691 TAGTAATACT-ACCCGCACGT-ATAGATAAATAAGAATAGGCTT 2650 >seq3075 Length=22699 Score = 93.3 bits (102), Expect = 7e-17 Identities = 93/118 (79%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65 |||| |||| | |||| | ||||||| |||||| ||||| ||| || ||||||||| Sbjct 4669 AGAGAAACCACT-AATTTA-AATAATTAGTTTTTACGGCTATCTAACTAGGCAGTGCTAT 4612 Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAA 123 ||||||| || | || ||| || ||| ||||||||||||| |||||| |||| |||| Sbjct 4611 AAAGCTACTATTTACTAGATAATAGCTAAACGCCTCTAAGTTAGAATCTATGCTAGAA 4554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819170089216