Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01]
3,769 sequences; 35,655,008 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq3285 241 2e-61
seq434 123 4e-26
seq3284 122 1e-25
seq3160 114 2e-23
seq2708 114 2e-23
seq892 109 9e-22
seq177 105 1e-20
seq3075 93.3 7e-17
>seq3285
Length=27627
Score = 241 bits (266), Expect = 2e-61
Identities = 225/278 (81%), Gaps = 6/278 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || |||||| ||||||||||||||||||||| |||| ||||||
Sbjct 7516 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 7573
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 7574 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 7633
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||| |||||| | | || |||| | ||| ||| | ||||||||| |||| |
Sbjct 7634 GAACGCGGTGATAC-CGCCCGCACGT-ATAGATGGACAAGAATAGGCTCCGGCTTAGCGT 7691
Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240
|||||||||| | ||| | | ||||||||| | | | | | ||| |||| |
Sbjct 7692 CTTAGCAGGCGATCTCTCCGCGGCGC-AGGAAGCGCGTCGTGGT-ATTTCGCGTATTGTA 7749
Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
|||||| || | || ||| ||||||||||||||||||
Sbjct 7750 ATTTCAACACGAGCGGGGTCAAATCCTTTGCAGACGAC 7787
Score = 156 bits (172), Expect = 7e-36
Identities = 203/273 (74%), Gaps = 6/273 (2%)
Strand=Plus/Plus
Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65
|||| |||||| |||| | ||||||| ||||||||||||||||||| ||||||||||||
Sbjct 15905 AGAGAAACCGCT-AATTTA-AATAATTAGTTTTTGCGGCTGTCTGACTAGGCAGTGCCGC 15962
Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125
|||||||| || | || ||| || ||| ||||||||||||| |||||| |||| ||||||
Sbjct 15963 GAAGCTACTATTTACTAGATAATAGCTAAACGCCTCTAAGTTAGAATCTATGCTAGAACG 16022
Query 126 GGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAACCTTAG 185
|| || | | || | || | ||| |||| ||||||||| || | |||||
Sbjct 16023 CAGTAATAC-CGCCCGTACGT-ATAGATAGATAAGAATAGGCTCTAGCTTAGCGTCTTAG 16080
Query 186 CAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCAATTTC 245
||||| | ||| | | ||||||||| | | | | | ||| |||| |||||
Sbjct 16081 CAGGCAATCTCTCCGCGGCGC-AGGAAGCGCGTCGTGGT-ATTTCGCGTATTGTAATTTT 16138
Query 246 ACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
| || |||||| ||||||||||||||||||
Sbjct 16139 AACACAAGCAGGGTCAAATCCTTTGCAGACGAC 16171
>seq434
Length=12928
Score = 123 bits (136), Expect = 4e-26
Identities = 107/130 (82%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65
|||| |||||| |||| ||| ||||| |||||||||||| ||| || ||||||||||||
Sbjct 8295 AGAGAAACCGCT-AATTTAGA-TAATTAGTTTTTGCGGCTATCTAACTAGGCAGTGCCGC 8352
Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125
|||||||| || | || ||| || ||| || |||| ||||| ||||||||||| ||||||
Sbjct 8353 GAAGCTACTATTTACTAGATAATAGCTAAATGCCTTTAAGTTAGAATCCATGCTAGAACG 8412
Query 126 GGGTGATTCT 135
||| || ||
Sbjct 8413 TGGTAATACT 8422
>seq3284
Length=6720
Score = 122 bits (134), Expect = 1e-25
Identities = 96/114 (84%), Gaps = 1/114 (1%)
Strand=Plus/Minus
Query 19 AATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCT 78
|||| ||| ||||| |||||| ||||| ||| || |||||||||||||||||||| || |
Sbjct 1563 AATTTAGA-TAATTAGTTTTTACGGCTATCTAACTAGGCAGTGCCGCGAAGCTACTATTT 1505
Query 79 GCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGAT 132
|| ||| || ||| ||||||||||||| |||||| ||||||||||| ||| ||
Sbjct 1504 ACTAGATAATAGCTAAACGCCTCTAAGTTAGAATCTATGCCAGAACGCGGTAAT 1451
>seq3160
Length=33358
Score = 114 bits (126), Expect = 2e-23
Identities = 127/164 (77%), Gaps = 4/164 (2%)
Strand=Plus/Minus
Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65
|||||||| || |||| ||| ||||| |||||||||||| ||| || |||||||||
Sbjct 13922 AGAGGAACTGCT-AATTTAGA-TAATTAGTTTTTGCGGCTATCTAACTAGGCAGTGCTAT 13865
Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125
||||||| || |||| ||| || ||| || |||||||||| |||||| |||| ||||||
Sbjct 13864 AAAGCTACTATTTGCTAGATAATAGCTAAATGCCTCTAAGTTAGAATCTATGCTAGAACG 13805
Query 126 GGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTT 169
|| || || | ||||| | ||| |||| ||||||||||
Sbjct 13804 TAGTAATACT-GCTTGCACGT-ATAGATAGATAAGAATAGGCTT 13763
Score = 113 bits (124), Expect = 7e-23
Identities = 126/163 (77%), Gaps = 4/163 (2%)
Strand=Plus/Minus
Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65
||||||||| | |||| ||| |||||||||||||||||| | | || |||||||||| |
Sbjct 2903 AGAGGAACCACT-AATTTAGA-TAATTGGTTTTTGCGGCTATTTAACTAGGCAGTGCCAC 2846
Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125
|||||||| || | || ||| || ||| || |||||||||| ||||| || | ||||||
Sbjct 2845 GAAGCTACTATTTACTAGATAATAGCTAAATGCCTCTAAGTTAGAATTTATACTAGAACG 2786
Query 126 GGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCT 168
|| || | | || |||| | ||| |||| |||||||||
Sbjct 2785 CAGTAATAC-CGCCCGCACGT-ATAGATAGATAAGAATAGGCT 2745
>seq2708
Length=20175
Score = 114 bits (126), Expect = 2e-23
Identities = 127/164 (77%), Gaps = 4/164 (2%)
Strand=Plus/Minus
Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65
||||||||||| |||| | ||||||| ||||||| |||| ||| || ||||| |||||
Sbjct 12022 AGAGGAACCGCT-AATTTA-AATAATTAGTTTTTGTGGCTATCTAACTAGGCAATGCCGT 11965
Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125
||||||| ||||||| ||| || ||| ||||||||||||| | |||| || | | ||||
Sbjct 11964 AAAGCTACTATCTGCTAGATAATAGCTAAACGCCTCTAAGTTAAAATCTATACTAAAACG 11905
Query 126 GGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTT 169
|| || || | | ||||| ||| |||| ||||||||||
Sbjct 11904 CAGTAATACT-ACTTACACAT-ATAGATAGATAAGAATAGGCTT 11863
>seq892
Length=12392
Score = 109 bits (120), Expect = 9e-22
Identities = 95/117 (81%), Gaps = 1/117 (1%)
Strand=Plus/Plus
Query 19 AATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCT 78
|||| ||| ||||| |||||| ||||| ||| || ||| |||||| ||||||||| || |
Sbjct 6959 AATTTAGA-TAATTAGTTTTTACGGCTATCTAACTAGGTAGTGCCACGAAGCTACTATTT 7017
Query 79 GCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCT 135
|| ||| || ||| ||||||||||||| |||||| |||| |||||| ||||| ||
Sbjct 7018 ACTAGATAATAGCTAAACGCCTCTAAGTTAGAATCTATGCTAGAACGTAGTGATACT 7074
>seq177
Length=8061
Score = 105 bits (116), Expect = 1e-20
Identities = 125/164 (76%), Gaps = 4/164 (2%)
Strand=Plus/Minus
Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65
||||||| ||| |||| ||| ||||| |||||| ||||| ||| || ||| ||||| |
Sbjct 2809 AGAGGAATCGCT-AATTTAGA-TAATTAGTTTTTACGGCTATCTAACTAGGTAGTGCTAC 2752
Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125
||||||| ||||||| ||| || ||| ||||||||||||| ||||| || | ||||||
Sbjct 2751 AAAGCTACTATCTGCTAGATAATAGCTAAACGCCTCTAAGTTAGAATTTATACTAGAACG 2692
Query 126 GGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTT 169
|| || || || |||| | ||| ||| ||||||||||
Sbjct 2691 TAGTAATACT-ACCCGCACGT-ATAGATAAATAAGAATAGGCTT 2650
>seq3075
Length=22699
Score = 93.3 bits (102), Expect = 7e-17
Identities = 93/118 (79%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65
|||| |||| | |||| | ||||||| |||||| ||||| ||| || |||||||||
Sbjct 4669 AGAGAAACCACT-AATTTA-AATAATTAGTTTTTACGGCTATCTAACTAGGCAGTGCTAT 4612
Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAA 123
||||||| || | || ||| || ||| ||||||||||||| |||||| |||| ||||
Sbjct 4611 AAAGCTACTATTTACTAGATAATAGCTAAACGCCTCTAAGTTAGAATCTATGCTAGAA 4554
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819170089216
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |