Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2389 264 9e-66 seq3515 118 8e-22 >seq2389 Length=61879 Score = 264 bits (292), Expect = 9e-66 Identities = 1191/1865 (64%), Gaps = 52/1865 (3%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||||||||| | |||||| |||| || | | ||||||||||| || Sbjct 42875 ATCTACGGTGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGT 42816 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATA-ATTCGGCT 65195 |||||| || ||| || || ||||| || | | || |||| | | | || | Sbjct 42815 CTTGAGACCCAACTTCCAGCCAGCAAAGTGCATAGAGG-TGATCTTGCCCATAGTAGGAT 42757 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || | || | |||||| ||| ||||| | ||| ||||| || |||| Sbjct 42756 CCTTCATGTGAACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGATCGGCCGCCA 42697 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314 | | || | | |||| || |||||||| ||||||||||| || | | | | || Sbjct 42696 TCTGGATAACATGACGCTGAGAAATCTCCCAAACGGTCTTGTAGAGA-GCCTTGATGTCG 42638 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374 || || | |||| ||| | ||||| ||||| ||||| || ||| Sbjct 42637 GCGGGGATATTGGGGATGTTCTGAATGGAACCGTTCTCGGCAATGATGCGGTTCTTCATG 42578 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATG-TTGA--ACCAAGTGACGATTGATGACT 65431 | || ||||| | ||||| ||||| |||| |||| | | || | |||| ||| Sbjct 42577 GCATCCGACCAGAGACCCATATCGACGAGATCCTTGAGGAGCCAGGGG---TTGACGACC 42521 Query 65432 TGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGAT 65491 ||||| || || | || ||||| || || |||||||||||| || |||||| | Sbjct 42520 TGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCAC 42461 Query 65492 TCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAG 65551 ||| |||| || |||||||| | || || || || ||||||||||||| || ||| ||| Sbjct 42460 TCATTGTTACCCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAG 42401 Query 65552 TTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTA 65611 || || | |||| | | || | | || | |||||| | ||||| | | Sbjct 42400 TTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCACAACTCAGAA 42341 Query 65612 TCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGT----TCCGATACTGGCCGGTGA 65667 | ||||| | ||||| || || || | ||||| ||| || || Sbjct 42340 GGCTTGACATTC------CACATGTCGAACTGAAGAATACCTTCCGA----GGCGGGAGA 42291 Query 65668 ACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGAC-AGCTGGTCTCGAGTG 65726 || ||| || ||| || | ||| ||||| || | | || | | || || | Sbjct 42290 GCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGCTGTC-AGGG 42232 Query 65727 CGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGT 65786 | || || ||||||||||| || | || || ||||| ||||| |||| Sbjct 42231 CAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGA 42172 Query 65787 ACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGAC 65846 | ||||| | || | ||||| |||||| ||||| ||||| |||| ||||||||| | Sbjct 42171 AGGGCATGCGCAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTC 42112 Query 65847 GATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGC 65906 |||| |||| ||| | ||||| | ||||| | |||| ||| || || Sbjct 42111 GATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAATGATCT 42052 Query 65907 GATTCAAATTGCGTGTCACCACATGCACGATA-CGTCGCAATTGTTCGAAATCAAAATGT 65965 || | || || ||||| || || ||| | || | ||| || || Sbjct 42051 TGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTG-GAAGTC-----GT 41998 Query 65966 TTAGGACGA-TCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTT 66024 || | | | ||| | ||||| ||||| |||||||| || | ||| Sbjct 41997 AGCGGCCTTCTTTGTAGT--------CGACAAAGGCAGGAAGAGCAAGAGAGGCCAAGTT 41946 Query 66025 GCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCA 66084 ||| ||||| | ||| ||||| || ||||| | || || |||||||| || || Sbjct 41945 GCACACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCT 41886 Query 66085 GCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCAT 66144 ||| ||||| |||| |||| || || ||||| | ||||| ||||||||||||| ||| Sbjct 41885 GCGAATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCAT 41826 Query 66145 GTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTT 66204 | || |||| || || |||||||| | ||||| || ||| || | || Sbjct 41825 AAAGGGGTTGCCCGTTTCTGTCTGGGACTCGAGGATGGAGTACCAGAGCTTCTGGGCACG 41766 Query 66205 CACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATT 66263 | || | | | ||| | || | || || || | |||||||| || || | Sbjct 41765 AATAGT-CTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAAC--TC 41709 Query 66264 CACCCCATACT--TCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACC 66321 | | ||||| || | ||| | || |||| || |||||||| || | |||||| || Sbjct 41708 CTCGCCATAGCAATCAGCCAGGCCGGGGCACTCGTTGGGACACATGAGGGTCCAATCCCC 41649 Query 66322 ATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCG 66381 | || ||| || || ||| || ||||| || ||||| || || |||||| ||||| Sbjct 41648 GTTCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCG 41589 Query 66382 TGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGC 66441 || || | || || ||||||| || || ||||| || || || ||||| | || || Sbjct 41588 AGCACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACATCTGC 41529 Query 66442 ATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGAC 66501 ||||| || || || |||||||| || | || || ||| ||| || ||||| || Sbjct 41528 GTGCCAAGGCTCGAGATAGATGGCAAATGCACCAGGTCGCTTGTTGCCGCCCTGGTCAAC 41469 Query 66502 GTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATT 66561 ||| | || |||||||||||||| | ||| || | || ||||| ||| |||| || Sbjct 41468 GTATCTGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATGCCGTTGGATGTGCCGTT 41409 Query 66562 GGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACC 66621 ||||||| | || || || || || || ||| || |||| || |||||||| Sbjct 41408 GGTGCCGGCAATATAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATACCACC 41349 Query 66622 GGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTGTCCGGAATATGCCGTCAATGGAG 66679 ||| |||| ||||| ||||| || | | |||| | | || ||||||||| | Sbjct 41348 AGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTC--GTAGATACCGTCAATGCTG 41291 Query 66680 TCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAG 66739 || |||| ||| | ||| | || ||| || || || ||| || |||| | Sbjct 41290 TCGTCCTTCATGTCGACTAGGAAACAAGAAGACAGCTGACATTGGGGGGTACCGGCGTTG 41231 Query 66740 AAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATG 66799 ||||| || |||| ||||| || ||| | || |||||| | ||| || || | Sbjct 41230 AAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTTTCCAAA 41171 Query 66800 ACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGC 66859 || |||||||| || || ||| |||| ||| ||||| | | || ||||| Sbjct 41170 ACGCGCTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGAGGT 41111 Query 66860 CGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCA 66919 || ||||| | | | |||| | | | || || | ||||| ||||||| ||| Sbjct 41110 CGCTCGACGATCTTGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCA 41051 Query 66920 AAGTA 66924 ||||| Sbjct 41050 AAGTA 41046 >seq3515 Length=139295 Score = 118 bits (130), Expect = 8e-22 Identities = 335/503 (67%), Gaps = 15/503 (3%) Strand=Plus/Plus Query 61435 AAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA--TTTGGTGAACGAT 61492 ||||| || |||||| | |||||| ||| |||| | | || || | | || | Sbjct 84938 AAAGCAGACTGGGCCATTCGTTGGATT--CAGGACAAGGATTCCAGCTTCGCCCAGCGCT 84995 Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 || |||| || || | || ||||| | || ||||| || | |||||| | || || | Sbjct 84996 TGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCGATTTTCT 85055 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCG 61612 || | ||||| ||||| || |||||||| || |||||| ||| || | || || || | Sbjct 85056 GGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCCAACGAACTTATCTCCCGTG 85115 Query 61613 ACGAGGGCATGCATTGTGATTTTGC-TGTTTTGCTATT-CAAACGCTATCTGGTGAATCG 61670 | ||||| |||| || ||||| ||| || || || ||| |||| | | || Sbjct 85116 ATGAGGGTTTGCACACAGACTTTGCATGT----CTGTTGCACTCGC-ATCTTAAGCACCG 85170 Query 61671 TCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT 61730 | || | | || ||| | || || || || || || || || Sbjct 85171 AGCCAGCAAGCAAATAATCAAGGACATTATCACCGACGCTGTTGGCATTGAGCAAGAGTT 85230 Query 61731 TCTGACTGACGCTTTGCCCGTCT-CACTCATCGGCATGAATTGTGGACTAATGTCGCAGT 61789 | |||| || ||| |||| || | | ||| | |||||||| ||| ||| ||| | Sbjct 85231 TTTGACCGAGGCTCTGCC-GTGTGCTCTCCTAGGCATGAACGCCACACTGATGAAGCAAT 85289 Query 61790 ATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTAT-GAAGCGGATCTATAAT 61848 ||||||||||||| ||||| || || ||||| | | | |||| ||| || | || || Sbjct 85290 ATATTGAATTTGTCGCCGATCGCCTATTGGTTGCTCTTGGTAACGAAAAGG-TGTACAAA 85348 Query 61849 ACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTC 61908 || ||||| || ||||||||||| | ||||| ||| ||||||||| || || ||| Sbjct 85349 ACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGCAAGACAAACTTCTTC 85408 Query 61909 GAGAAACGTGTAGGCGACTATCA 61931 |||||||| || || || ||||| Sbjct 85409 GAGAAACGAGTTGGAGAATATCA 85431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397549737838160