Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq419 131 4e-28 >seq419 Length=20352 Score = 131 bits (144), Expect = 4e-28 Identities = 194/271 (72%), Gaps = 8/271 (3%) Strand=Plus/Plus Query 15 ATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTAC 74 |||| ||| || ||| ||||||||||| ||| | |||||||| |||||||| Sbjct 4427 ATCTGCACTGCTATTCCAATTTCACTGGGTCAATCATAGAGACAGCTGTTGTATCGTTAC 4486 Query 75 GCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATT 134 |||||| |||| | | | | ||| | | ||||| ||||||||||||||||||| | | Sbjct 4487 ACCATTCATGCAAGACCGCATTTAACGGCCAAGGCATTTCGCTACCTTAGGACCCTCA-C 4545 Query 135 GTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGT----TAGCTAACCCCA 190 |||| ||||||| || ||||||| ||| || | | | || || || Sbjct 4546 GTTAAGGCCGCCTTTAACCGGGGTTTCCGTCGACATCAAATAGTAGTATATTAAATTATC 4605 Query 191 TCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA-CTTTCGTGTTT- 248 || |||||| |||||||||||||| |||||| |||||| | | |||| | ||| Sbjct 4606 TCTGTTAACCAGCCGGCACCGGGCAGATATCACACTCTATACTTAGATTTTTCATCTTTC 4665 Query 249 -GCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 ||||||||||||||||| | |||||||||| Sbjct 4666 AGCAGAGTGCTGTGTTTTAATTAAACAGTCG 4696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260786534656