Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15]
1,068 sequences; 36,169,561 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq832 306 7e-81
seq812 306 7e-81
seq924 264 2e-68
seq933 255 1e-65
seq887 147 4e-33
>seq832
Length=1004
Score = 306 bits (338), Expect = 7e-81
Identities = 191/203 (94%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 581 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTA 640
Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245
| || |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 641 C-TC-CCTTGGCCGGAAGGCCTGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAG 698
Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305
|||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||
Sbjct 699 CATTGCAATTATTGCTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGT 758
Query 306 TGATTACGTCCCTGCCCTTTGTA 328
|||||||||||||||||||||||
Sbjct 759 TGATTACGTCCCTGCCCTTTGTA 781
Score = 147 bits (162), Expect = 4e-33
Identities = 96/106 (91%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||||||||| | |||||||| | ||| ||||||||||
Sbjct 68 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCTGGCTTCTTAG 127
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 173
>seq812
Length=1315
Score = 306 bits (338), Expect = 7e-81
Identities = 191/203 (94%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 479 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTA 538
Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245
| || |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 539 C-TC-CCTTGGCCGGAAGGCCTGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAG 596
Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305
|||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||
Sbjct 597 CATTGCAATTATTGCTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGT 656
Query 306 TGATTACGTCCCTGCCCTTTGTA 328
|||||||||||||||||||||||
Sbjct 657 TGATTACGTCCCTGCCCTTTGTA 679
Score = 111 bits (122), Expect = 3e-22
Identities = 67/71 (94%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 55 CTTTGGCGGGTCGCCGGCTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGG 114
||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTTTGGCAGTACGCTGGCTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGG 60
Query 115 CAATAACAGGT 125
|||||||||||
Sbjct 61 CAATAACAGGT 71
>seq924
Length=416
Score = 264 bits (292), Expect = 2e-68
Identities = 168/180 (93%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 149 GGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTG 208
||||||||||||||||||||||| |||||| ||||| | || |||||||||||||| |||
Sbjct 1 GGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTAC-TC-CCTTGGCCGGAAGGCCTG 58
Query 209 GGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAAC 268
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 59 GGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAAC 118
Query 269 GAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 119 GAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTGCCCTTTGTA 178
>seq933
Length=395
Score = 255 bits (282), Expect = 1e-65
Identities = 163/175 (93%), Gaps = 2/175 (1%)
Strand=Plus/Plus
Query 154 CACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAA 213
|||||||||||||||||| |||||| ||||| | || |||||||||||||| ||||||||
Sbjct 1 CACGCGCGCTACACTGACGGAGCCAGCGAGTAC-TC-CCTTGGCCGGAAGGCCTGGGTAA 58
Query 214 TCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGA 273
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGA 118
Query 274 ATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
|| |||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 119 ATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTGCCCTTTGTA 173
>seq887
Length=524
Score = 147 bits (162), Expect = 4e-33
Identities = 96/106 (91%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||||||||| | |||||||| | ||| ||||||||||
Sbjct 337 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCTGGCTTCTTAG 278
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 232
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947189883904
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |