Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq64 282 3e-71 seq13 114 1e-20 >seq64 Length=130623 Score = 282 bits (312), Expect = 3e-71 Identities = 1161/1808 (64%), Gaps = 52/1808 (3%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||||||||| | |||||| |||| || | | ||||||||||| || Sbjct 44669 ATCTACGGTGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGT 44610 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATA-ATTCGGCT 65195 |||||| || ||| || || ||||| || | | || |||| | | | || | Sbjct 44609 CTTGAGACCCAACTTCCAGCCAGCAAAGTGCATAGAGG-TGATCTTGCCCATAGTAGGAT 44551 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || | || | |||||| ||| ||||| | ||| ||||| || |||| Sbjct 44550 CCTTCATGTGGACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGATCGGCGGCCA 44491 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314 | | || | | |||| || |||||||| ||||||||||| || | | | | || Sbjct 44490 TCTGGATAACATGACGCTGAGAAATCTCCCAAACGGTCTTGTAGAGA-GCCTTGATGTCG 44432 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374 || || | |||| ||| | ||||| ||||| ||||| || ||| Sbjct 44431 GCGGGTATATTGGGGATGTTCTGAATGGAACCGTTCTCGGCAATGATGCGGTTCTTCATG 44372 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATG-TTGA--ACCAAGTGACGATTGATGACT 65431 | || ||||| | ||||| ||||| |||| |||| | | || | |||| ||| Sbjct 44371 GCATCAGACCAGAGACCCATATCGACGAGATCCTTGAGGAGCCAGGGG---TTGACGACC 44315 Query 65432 TGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGAT 65491 ||||| || || | || ||||| || || |||||||||||| || |||||| | Sbjct 44314 TGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCAC 44255 Query 65492 TCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAG 65551 ||| |||| || |||||||| | || || || || ||||||||||||| || ||| ||| Sbjct 44254 TCATTGTTACCCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAG 44195 Query 65552 TTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTA 65611 || || | |||| | | || | | || | |||||| | ||||| | | Sbjct 44194 TTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCACAACTCAGAA 44135 Query 65612 TCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGT----TCCGATACTGGCCGGTGA 65667 | ||||| | ||||| || ||| || | ||||| ||| || || Sbjct 44134 GGCTTGACATTC------CACATGTCGAATTGAAGAATACCTTCCGA----GGCGGGAGA 44085 Query 65668 ACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGAC-AGCTGGTCTCGAGTG 65726 || ||| || ||| || | ||| ||||| || | | || | | || || | Sbjct 44084 GCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGCTGTC-AGGG 44026 Query 65727 CGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGT 65786 | || || ||||||||||| || | || || ||||| ||||| |||| Sbjct 44025 CAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGA 43966 Query 65787 ACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGAC 65846 | ||||| | || | ||||| |||||| ||||| ||||| |||| ||||||||| | Sbjct 43965 AGGGCATGCGCAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTC 43906 Query 65847 GATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGC 65906 |||| |||| ||| | ||||| | ||||| | |||| ||| || || Sbjct 43905 GATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAATGATCT 43846 Query 65907 GATTCAAATTGCGTGTCACCACATGCACGATA-CGTCGCAATTGTTCGAAATCAAAATGT 65965 || | || || ||||| || || ||| | || | ||| || || Sbjct 43845 TGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTG-GAAGTC-----GT 43792 Query 65966 TTAGGACGA-TCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTT 66024 || | | | ||| | || || |||||||||||||| || | ||| Sbjct 43791 AGCGGCCTTCTTTGTAGT--------CGACGAAGGCAGGAAGGGCAAGAGAGGCCAAGTT 43740 Query 66025 GCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCA 66084 ||| ||||| | ||| ||||| || ||||| | || || |||||||| || || Sbjct 43739 GCAAACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCT 43680 Query 66085 GCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCAT 66144 ||| ||||| |||| |||| || || ||||| | ||||| ||||||||||||| ||| Sbjct 43679 GCGAATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCAT 43620 Query 66145 GTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTT 66204 | || |||| || || |||||||| | ||||| || ||| || | || Sbjct 43619 AAAGGGGTTGCCCGTTTCGGTCTGGGACTCGAGGATGGAGTACCAGAGCTTCTGGGCACG 43560 Query 66205 CACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATT 66263 | || | | | ||| | || | || || || | |||||||| || || | Sbjct 43559 AATAGT-CTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAAC--TC 43503 Query 66264 CACCCCATACT--TCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACC 66321 | | ||||| || | ||| | || |||| || |||||||| || | |||||| || Sbjct 43502 CTCGCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGAGTCCAATCTCC 43443 Query 66322 ATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCG 66381 || || ||| || || ||| || ||||| || ||||| || || |||||||||||| Sbjct 43442 ATTCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGATCGCG 43383 Query 66382 TGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGC 66441 || || | || || |||| || || || ||||| || || || ||||| | ||| || Sbjct 43382 AGCACGGTTTTCTTCCTTGCCATGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGC 43323 Query 66442 ATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGAC 66501 ||||| || || ||||||||||| || | || || ||| ||| || ||||| || Sbjct 43322 GTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTGCCGCCCTGGTCAAC 43263 Query 66502 GTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATT 66561 ||| | || |||||||||||||| | ||| || | || ||||| ||| | ||||| Sbjct 43262 GTATCTGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATGCCGTTGGATGTACCATT 43203 Query 66562 GGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACC 66621 ||||||| | ||| || || || || || ||| || |||| || |||||||| Sbjct 43202 GGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATACCACC 43143 Query 66622 GGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTGTCCGGAATATGCCGTCAATGGAG 66679 ||| |||| ||||| ||||| || | | |||| | | || ||||||||| | Sbjct 43142 AGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTC--GTAGATACCGTCAATGCTG 43085 Query 66680 TCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAG 66739 ||| |||| ||| | || | || ||| || || || ||| || |||| | Sbjct 43084 TCATCCTTCATGTCGACTAGAAAACAAGAAGACAGCTGACATTGGGGGGTACCGGCGTTG 43025 Query 66740 AAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATG 66799 ||||| || |||| ||||| || ||| | || |||||| | ||| ||||| | Sbjct 43024 AAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAA 42965 Query 66800 ACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGC 66859 || |||||||| || || ||| |||| ||| ||||| | || ||||| Sbjct 42964 ACGCGCTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAGTCATGTGCTGAGGT 42905 Query 66860 CGTTCGAC 66867 || ||||| Sbjct 42904 CGCTCGAC 42897 >seq13 Length=282089 Score = 114 bits (126), Expect = 1e-20 Identities = 334/503 (66%), Gaps = 15/503 (3%) Strand=Plus/Plus Query 61435 AAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA--TTTGGTGAACGAT 61492 ||||| || |||||| | |||||| ||| |||| | | || || | | || | Sbjct 96855 AAAGCAGACTGGGCCATTCGTTGGATT--CAGGACAAGGATTCCAGCTTCGCCCAGCGCT 96912 Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 || |||| || || | || ||||| | || ||||| || | |||||| | || || | Sbjct 96913 TGGTGGCTTTCGCTGCCGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCGATATTCT 96972 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCG 61612 || | ||||| ||||| || |||||||| || |||||| ||||| | || || || | Sbjct 96973 GGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAATGAACTTATCTCTCGTG 97032 Query 61613 ACGAGGGCATGCATTGTGATTTTGC-TGTTTTGCTATT-CAAACGCTATCTGGTGAATCG 61670 | ||||| |||| || ||||| ||| || || || ||| |||| | | || Sbjct 97033 ATGAGGGTTTGCACACAGACTTTGCATGT----CTGTTGCACTCGC-ATCTTAAGCACCG 97087 Query 61671 TCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT 61730 | || | | | || || | || || || || || || || || Sbjct 97088 AGCCAGCAAGAAAATTATCCAGGATATCATCACCGACGCTGTTGGGATTGAGCAAGAGTT 97147 Query 61731 TCTGACTGACGCTTTGCCCGTCT-CACTCATCGGCATGAATTGTGGACTAATGTCGCAGT 61789 | |||| || ||| |||| || | | ||| | |||||||| ||| ||| ||| | Sbjct 97148 TTTGACCGAGGCTCTGCC-GTGTGCTCTCCTAGGCATGAACGCCACACTGATGAAGCAAT 97206 Query 61790 ATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTAT-GAAGCGGATCTATAAT 61848 ||||||||||||| ||||| || | ||||| | | | |||| ||| || | || || Sbjct 97207 ATATTGAATTTGTCGCCGATCGCTTATTGGTTGCTCTTGGTAACGAAAAGG-TATACAAA 97265 Query 61849 ACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTC 61908 || ||||| || ||||||||||| | ||||| ||| |||||||||||| || ||| Sbjct 97266 ACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGCAAGACGAACTTCTTC 97325 Query 61909 GAGAAACGTGTAGGCGACTATCA 61931 ||||| || || || || ||||| Sbjct 97326 GAGAAGCGAGTTGGAGAATATCA 97348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397562825155520