Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq60 96.9 1e-14 >seq60 Length=136323 Score = 96.9 bits (106), Expect = 1e-14 Identities = 119/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 364411 CTCCATGAGCTTACCAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTC 364470 ||| || || | | |||| ||||| || |||||||||| | | ||||||||||||||||| Sbjct 31390 CTCGATCAGGTGAGCAATCGTCATTCGCGAGGGAATGGCGTGTGGGTTGATGATGATGTC 31449 Query 364471 AGGCACCATGCCGTCAGCGGTAAAGGGCATAT-CTTCGGGAGGAACGATGAGACCAATGG 364529 ||| | || || ||||| ||||| | || | | || | | ||| |||||| | Sbjct 31450 TGGCGTGACACCTTCCCGAGTAAACGGCATGTCCTCCTGTCGGTAAG-TGACACCAATAG 31508 Query 364530 TTCCCTTTTGCGCATAGCGAGAAGCAAACTTGTCGCCAAT 364569 | ||||||||| | | |||||| || |||||||| ||||| Sbjct 31509 TGCCCTTTTGCCCGTGGCGAGAGGCGAACTTGTCTCCAAT 31548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884860607685724