Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15]
36,463 sequences; 36,098,533 total letters
Query= AAMG01000140.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
seq14514 223 7e-56
>seq14514
Length=344
Score = 223 bits (246), Expect = 7e-56
Identities = 218/277 (79%), Gaps = 3/277 (1%)
Strand=Plus/Minus
Query 14 GGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGGTG 73
|| |||||||||| ||||||||| ||| ||||||||||||||||| | | ||||
Sbjct 277 GGAGTGAAATAGATCCTGAACCCATACGCTTACAAGCGGTCGGAGCCCTTTCGTGGGGTG 218
Query 74 ACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGGCT 133
||||||||||||||||||||||||||||||||||| ||| | || ||| |||| ||
Sbjct 217 ACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTA-CCGTTGCTGGCAAGGATAAGCACT 159
Query 134 TCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCG-ACGAGTTGGTGGCGCTA 192
||||| | | ||| || ||||||||| || || |||||| ||| || | ||
Sbjct 158 TCAGGTGTG-GATCCGTAGCGAAAGCGAGTCTGAATAGGGCGCTATAGTCAGTAATGGTA 100
Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAG 252
||||||||||| ||||||||||||| | ||||| ||||| | |||||| | | |||||
Sbjct 99 GACGCGAAACCGTGTGATCTACCCATGGGCAGGATGAAGCTGTGGTAACACATAGTGGAG 40
Query 253 GACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGAC 289
| |||||||||| |||||||||||| ||||||||||
Sbjct 39 GTCCGAACCGGTTGACGTTGAAAAGTCTTCGGATGAC 3
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 972445287936
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |