Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15]
36,463 sequences; 36,098,533 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq968 172 3e-41
seq24332 136 2e-30
seq26495 95.1 7e-18
seq9686 84.2 1e-14
>seq968
Length=8442
Score = 172 bits (190), Expect = 3e-41
Identities = 109/117 (93%), Gaps = 1/117 (1%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
|| ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| ||
Sbjct 6269 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCC 6327
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 6328 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 6384
>seq24332
Length=240
Score = 136 bits (150), Expect = 2e-30
Identities = 101/117 (86%), Gaps = 1/117 (1%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
|| ||||| |||||| ||||||||||| |||||| |||||||||| |||||||| ||
Sbjct 91 GAGCCCAAGCACTTTGTTTTCTCGTAAGTTGCCGAACGAGTCAAAAA-ATAACATCATCC 149
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||||||| ||||| ||| ||||||||||| |||||||||| |||||| ||||
Sbjct 150 GATCCCTAGTCGACATAGATTATGGTTAAGACTAAGACGGTATCTCATCGTCCTCGA 206
>seq26495
Length=231
Score = 95.1 bits (104), Expect = 7e-18
Identities = 85/104 (82%), Gaps = 2/104 (2%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59
||||||||| ||||||||||||| ||||||||| ||| ||||| | |||||| |
Sbjct 129 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTATAAGCAACATCCGC 187
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTAT 103
||||||| |||||||| ||||| |||| |||||| ||||||||
Sbjct 188 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTAT 231
>seq9686
Length=430
Score = 84.2 bits (92), Expect = 1e-14
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Minus
Query 69 GTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 430 GTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 382
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 278304831570
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |