Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq968 172 3e-41 seq24332 136 2e-30 seq26495 95.1 7e-18 seq9686 84.2 1e-14 >seq968 Length=8442 Score = 172 bits (190), Expect = 3e-41 Identities = 109/117 (93%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct 6269 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCC 6327 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 6328 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 6384 >seq24332 Length=240 Score = 136 bits (150), Expect = 2e-30 Identities = 101/117 (86%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| |||||| ||||||||||| |||||| |||||||||| |||||||| || Sbjct 91 GAGCCCAAGCACTTTGTTTTCTCGTAAGTTGCCGAACGAGTCAAAAA-ATAACATCATCC 149 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||| ||||| ||| ||||||||||| |||||||||| |||||| |||| Sbjct 150 GATCCCTAGTCGACATAGATTATGGTTAAGACTAAGACGGTATCTCATCGTCCTCGA 206 >seq26495 Length=231 Score = 95.1 bits (104), Expect = 7e-18 Identities = 85/104 (82%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||| ||| ||||| | |||||| | Sbjct 129 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTATAAGCAACATCCGC 187 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTAT 103 ||||||| |||||||| ||||| |||| |||||| |||||||| Sbjct 188 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTAT 231 >seq9686 Length=430 Score = 84.2 bits (92), Expect = 1e-14 Identities = 48/49 (98%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 69 GTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 430 GTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278304831570