Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15]
36,463 sequences; 36,098,533 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq9686 464 1e-128
seq968 464 1e-128
seq12757 417 1e-114
seq21464 293 4e-77
seq9406 219 8e-55
seq939 214 3e-53
seq1771 208 1e-51
seq1868 190 4e-46
seq35803 167 4e-39
seq1046 159 6e-37
seq9905 75.2 2e-11
seq12288 73.4 7e-11
>seq9686
Length=430
Score = 464 bits (514), Expect = 1e-128
Identities = 292/314 (93%), Gaps = 1/314 (0%)
Strand=Plus/Plus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
|||||||||||||||||||| |||| ||| || |||||||||||||||| ||| ||||||
Sbjct 68 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGCGTGGCGGGGA 127
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124
|||||||||||||||||||||||||||||| || | |||||||| |||||||||||||
Sbjct 128 AACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 187
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 188 TAGCATGGAATAATGAAATAGGACGCGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 247
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 248 AATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 307
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 308 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-GA 366
Query 305 ACGAAAGTTAGGGG 318
||||||||||||||
Sbjct 367 ACGAAAGTTAGGGG 380
>seq968
Length=8442
Score = 464 bits (514), Expect = 1e-128
Identities = 292/314 (93%), Gaps = 1/314 (0%)
Strand=Plus/Minus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
|||||||||||||||||||| |||| ||| || |||||||||||||||| ||| ||||||
Sbjct 6698 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGCGTGGCGGGGA 6639
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124
|||||||||||||||||||||||||||||| || | |||||||| |||||||||||||
Sbjct 6638 AACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 6579
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 6578 TAGCATGGAATAATGAAATAGGACGCGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 6519
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 6518 AATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 6459
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 6458 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-GA 6400
Query 305 ACGAAAGTTAGGGG 318
||||||||||||||
Sbjct 6399 ACGAAAGTTAGGGG 6386
>seq12757
Length=372
Score = 417 bits (462), Expect = 1e-114
Identities = 281/313 (90%), Gaps = 1/313 (0%)
Strand=Plus/Plus
Query 6 GGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAG 65
|| |||||||||||||||| |||| ||| || |||||||||||| ||| | | ||||||
Sbjct 53 GGCCCGGCCGGGCCTTTCCCTCTGTGGACCCCCATGCCCTTCACGGGGCGGGGCGGGGAA 112
Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATT 125
||||||||||||||| |||||||||||||| | | |||||| | ||||||||||||||
Sbjct 113 ACAGGACTTTTACTTTAAAAAAATTAGAGTGCCCCAGGCAGGCTTATGCTCGAATACATT 172
Query 126 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTA 185
|||| | |||||| ||||||||| |||||| | ||||||||||||||||||||||||||
Sbjct 173 AGCAGGAAATAATGAAATAGGACGCGCGGTTTTTTTTTGTTGGTTTCTAGGACCGCCGTA 232
Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 233 ATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 292
Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305
|||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 293 TTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-GAA 351
Query 306 CGAAAGTTAGGGG 318
|||||||||||||
Sbjct 352 CGAAAGTTAGGGG 364
>seq21464
Length=257
Score = 293 bits (324), Expect = 4e-77
Identities = 206/234 (88%), Gaps = 1/234 (0%)
Strand=Plus/Plus
Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGG 132
|||||||| |||||| ||||||| | || |||||||||| ||||||||||||| |
Sbjct 25 TTTTACTTAAAAAAAAGTAGAGTGCCCCGGGCGGGCCTTTGCTGGAATACATTAGCAGGA 84
Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192
||||| | ||| ||||| | | |||| ||| |||||||||| ||||||||||||||||||
Sbjct 85 AATAAGAAAATGGGACGCGGGTTTCTTTTTGGTTGGTTTCTGGGACCGCCGTAATGATTA 144
Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 145 ATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 204
Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306
||||||||||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct 205 AAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-GAAC 257
>seq9406
Length=436
Score = 219 bits (242), Expect = 8e-55
Identities = 197/246 (80%), Gaps = 1/246 (0%)
Strand=Plus/Minus
Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGG 132
||||||||| ||||||||| |||| || | | | |||| |||| ||||||||||||| |
Sbjct 436 TTTTACTTTAAAAAAATTAAAGTGCTCTAGGTAAGCCTATGCTTAAATACATTAGCATAG 377
Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192
||||||| |||| ||| | |||| |||||| || ||||||||||| | |||| ||||
Sbjct 376 AATAATAAAATAAGACATATGGTTTTATTTTATTAGTTTCTAGGACTACTATAATAATTA 317
Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252
||| | ||||| || || | |||||| |||| | |||||| |||||||| ||||||||
Sbjct 316 ATAAGAATAGTTAGGAGTATTAGTATTTAATTATTAGAGGTAAAATTCTTAGATTTATTA 257
Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
||||||||||||| ||||| || || |||||| |||| |||||| || ||| |||||
Sbjct 256 AAGACTAACTACTAAAAAAGCATTTACTAAGGATATTTTTATTAATTAG-GAATAAAAGT 198
Query 313 TAGGGG 318
||||||
Sbjct 197 TAGGGG 192
>seq939
Length=8709
Score = 214 bits (236), Expect = 3e-53
Identities = 198/250 (79%), Gaps = 1/250 (0%)
Strand=Plus/Minus
Query 69 GGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGC 128
||||||||||||| |||||||||||||| | | | | || | |||| |||| |||||
Sbjct 8709 GGACTTTTACTTTAAAAAAATTAGAGTGCTTTAGGTAAGCTTATGCTTAAATATATTAGT 8650
Query 129 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188
|| |||||||| |||| || | |||| |||||| || |||||||||| | ||||
Sbjct 8649 ATAGAATAATAAAATAAGATATATGGTTTTATTTTATTAGTTTCTAGGATTACTATAATA 8590
Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248
||||||| ||||||| ||||| | |||||| |||| | | |||||||||||||||||||
Sbjct 8589 ATTAATAAGGATAGTTAGGGGTATTAGTATTTAATTATTAAAGGTGAAATTCTTGGATTT 8530
Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308
||| |||||||| |||| |||| || || ||||||||||| |||||| || ||| |
Sbjct 8529 ATTAAAGACTAATTACTATAAAAGTATTTACTAAGGATGTTTTTATTAATTAG-GAATAA 8471
Query 309 AAGTTAGGGG 318
||||||||||
Sbjct 8470 AAGTTAGGGG 8461
>seq1771
Length=3138
Score = 208 bits (230), Expect = 1e-51
Identities = 228/302 (75%), Gaps = 1/302 (0%)
Strand=Plus/Minus
Query 16 GGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTT 75
||||||||| ||| | || |||||||| ||| || | ||| ||||||||
Sbjct 493 GGCCTTTCCCTCTATAAAACCCTATGCCCTTTACTAGGCATAGTAAGGAAATAGGACTTT 434
Query 76 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAAT 135
|||||| |||| ||||||||| | | |||||| | |||| |||| ||||| || ||||
Sbjct 433 TACTTTAAAAATATTAGAGTGCTTTAGGCAGGCTTATGCTTAAATATATTAGTATAGAAT 374
Query 136 AATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATA 195
|||| |||| ||| ||| |||||| || ||||||||||| | |||| |||||||
Sbjct 373 AATAAAATAAAACGCATAGTTTTATTTTATTAGTTTCTAGGACTACTATAATAATTAATA 314
Query 196 GGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAG 255
|||||||| ||||| | |||||| |||| | | |||| |||||||| |||||||| |||
Sbjct 313 GGGATAGTTAGGGGTATTAGTATTGAATTATTAAAGGTAAAATTCTTAGATTTATTAAAG 254
Query 256 ACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315
|||||||||| |||| || | |||||| |||| |||||| | ||| ||||||||
Sbjct 253 ACTAACTACTATAAAAGTATTTGCTAAGGATATTTTTATTAATTA-AAAACAAAAGTTAG 195
Query 316 GG 317
||
Sbjct 194 GG 193
>seq1868
Length=2737
Score = 190 bits (210), Expect = 4e-46
Identities = 170/212 (80%), Gaps = 1/212 (0%)
Strand=Plus/Plus
Query 107 GCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTT 166
|||| |||| |||| |||||||| |||||||| |||||||| | |||| |||||| ||
Sbjct 3 GCCTATGCTTAAATATATTAGCATAGAATAATAAAATAGGACACGTGGTTTTATTTTATT 62
Query 167 GGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGT 226
||||||| ||| | |||| ||||||| ||||||| ||||| | |||||| |||| |
Sbjct 63 AGTTTCTAAGACTACTATAATAATTAATAAGGATAGTTAGGGGTATTAGTATTTAATTAT 122
Query 227 CAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGAT 286
||||||||||||||| |||||||| |||||||| |||| ||||| || || ||| ||
Sbjct 123 TAGAGGTGAAATTCTTAGATTTATTAAAGACTAATTACTATAAAAGCATTTACTAAGAAT 182
Query 287 GTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
||||| |||||| || || |||||||||||
Sbjct 183 GTTTTTATTAATTAG-AAATAAAAGTTAGGGG 213
>seq35803
Length=206
Score = 167 bits (184), Expect = 4e-39
Identities = 149/187 (80%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
||| | || |||||||| || || ||||| || |||||||||| ||| | | ||| |
Sbjct 187 TGGCCGGGGCGGGCCTTCCCCTCGGGGGACCCCCATGCCCTTCGGGGGGGGGGGGGGGAA 128
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124
|||||||||| ||| |||||||| ||||| || || ||||| ||| |||||||||
Sbjct 127 AACAGGACTTTTTCTTGAAAAAAATTGGAGTGCTCCGGGCGGGCCTATGCGCGAATACAT 68
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184
||||||||||||| ||| || || ||| |||| |||||||| ||||||||||||||||
Sbjct 67 TAGCATGGAATAAGGAAATGGGGCGCGCGTTTCTTTTTTGTTGTTTTCTAGGACCGCCGT 8
Query 185 AATGATT 191
|||||||
Sbjct 7 AATGATT 1
>seq1046
Length=7630
Score = 159 bits (176), Expect = 6e-37
Identities = 164/212 (77%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 107 GCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTT 166
|||| |||| |||| ||||| || ||||||| |||| ||| |||| ||| || ||
Sbjct 7628 GCCTATGCTTAAATATATTAGTATAAAATAATAAAATAA-ACGCATGGTTTTATCTTATT 7570
Query 167 GGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGT 226
||||||||||| | |||| ||||||| ||||||| ||||| | |||||| |||| |
Sbjct 7569 AGTTTCTAGGACTACTATAATAATTAATAAGGATAGTTAGGGGTATTAGTATTTAATTAT 7510
Query 227 CAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGAT 286
| |||| |||||||| |||||||| |||||||| |||| ||||| || || ||||||
Sbjct 7509 TAAAGGTAAAATTCTTAGATTTATTAAAGACTAATTACTATAAAAGCATTTACTAAGGAT 7450
Query 287 GTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
|||| |||||| || ||| ||||||| |||
Sbjct 7449 ATTTTTATTAATTAG-GAATAAAAGTTAAGGG 7419
>seq9905
Length=425
Score = 75.2 bits (82), Expect = 2e-11
Identities = 73/93 (78%), Gaps = 1/93 (1%)
Strand=Plus/Plus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
||| |||||||||||||||| ||| || || ||||||||||||| || | | ||||||
Sbjct 319 TGGGCCGGCCGGGCCTTTCCCCCTGTGGTACCCCATGCCCTTCACTCGGCGCGGCGGGGA 378
Query 65 GCCAGGACTTTTACT-TTGAAAAAATTAGAGTG 96
|||||| |||||| ||| | || ||||||
Sbjct 379 AACAGGACATTTACTCTTGCAGCCATCAGAGTG 411
>seq12288
Length=380
Score = 73.4 bits (80), Expect = 7e-11
Identities = 51/58 (88%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGG 62
||||||||||||| |||||| |||| ||| || |||||||||||||||| ||| ||||
Sbjct 58 TGGTCCGGCCGGGACTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGCGTGGCGGG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 914866290624
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