Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq9686 464 1e-128 seq968 464 1e-128 seq12757 417 1e-114 seq21464 293 4e-77 seq9406 219 8e-55 seq939 214 3e-53 seq1771 208 1e-51 seq1868 190 4e-46 seq35803 167 4e-39 seq1046 159 6e-37 seq9905 75.2 2e-11 seq12288 73.4 7e-11 >seq9686 Length=430 Score = 464 bits (514), Expect = 1e-128 Identities = 292/314 (93%), Gaps = 1/314 (0%) Strand=Plus/Plus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 |||||||||||||||||||| |||| ||| || |||||||||||||||| ||| |||||| Sbjct 68 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGCGTGGCGGGGA 127 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 |||||||||||||||||||||||||||||| || | |||||||| ||||||||||||| Sbjct 128 AACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 187 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 188 TAGCATGGAATAATGAAATAGGACGCGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 247 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 248 AATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 307 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || Sbjct 308 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-GA 366 Query 305 ACGAAAGTTAGGGG 318 |||||||||||||| Sbjct 367 ACGAAAGTTAGGGG 380 >seq968 Length=8442 Score = 464 bits (514), Expect = 1e-128 Identities = 292/314 (93%), Gaps = 1/314 (0%) Strand=Plus/Minus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 |||||||||||||||||||| |||| ||| || |||||||||||||||| ||| |||||| Sbjct 6698 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGCGTGGCGGGGA 6639 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 |||||||||||||||||||||||||||||| || | |||||||| ||||||||||||| Sbjct 6638 AACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 6579 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 6578 TAGCATGGAATAATGAAATAGGACGCGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 6519 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 6518 AATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 6459 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || Sbjct 6458 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-GA 6400 Query 305 ACGAAAGTTAGGGG 318 |||||||||||||| Sbjct 6399 ACGAAAGTTAGGGG 6386 >seq12757 Length=372 Score = 417 bits (462), Expect = 1e-114 Identities = 281/313 (90%), Gaps = 1/313 (0%) Strand=Plus/Plus Query 6 GGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAG 65 || |||||||||||||||| |||| ||| || |||||||||||| ||| | | |||||| Sbjct 53 GGCCCGGCCGGGCCTTTCCCTCTGTGGACCCCCATGCCCTTCACGGGGCGGGGCGGGGAA 112 Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATT 125 ||||||||||||||| |||||||||||||| | | |||||| | |||||||||||||| Sbjct 113 ACAGGACTTTTACTTTAAAAAAATTAGAGTGCCCCAGGCAGGCTTATGCTCGAATACATT 172 Query 126 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTA 185 |||| | |||||| ||||||||| |||||| | |||||||||||||||||||||||||| Sbjct 173 AGCAGGAAATAATGAAATAGGACGCGCGGTTTTTTTTTGTTGGTTTCTAGGACCGCCGTA 232 Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 233 ATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 292 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 |||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||| Sbjct 293 TTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-GAA 351 Query 306 CGAAAGTTAGGGG 318 ||||||||||||| Sbjct 352 CGAAAGTTAGGGG 364 >seq21464 Length=257 Score = 293 bits (324), Expect = 4e-77 Identities = 206/234 (88%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGG 132 |||||||| |||||| ||||||| | || |||||||||| ||||||||||||| | Sbjct 25 TTTTACTTAAAAAAAAGTAGAGTGCCCCGGGCGGGCCTTTGCTGGAATACATTAGCAGGA 84 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192 ||||| | ||| ||||| | | |||| ||| |||||||||| |||||||||||||||||| Sbjct 85 AATAAGAAAATGGGACGCGGGTTTCTTTTTGGTTGGTTTCTGGGACCGCCGTAATGATTA 144 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 145 ATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 204 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 ||||||||||||||||||||| || ||||||||||||||||||||||| |||| Sbjct 205 AAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-GAAC 257 >seq9406 Length=436 Score = 219 bits (242), Expect = 8e-55 Identities = 197/246 (80%), Gaps = 1/246 (0%) Strand=Plus/Minus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGG 132 ||||||||| ||||||||| |||| || | | | |||| |||| ||||||||||||| | Sbjct 436 TTTTACTTTAAAAAAATTAAAGTGCTCTAGGTAAGCCTATGCTTAAATACATTAGCATAG 377 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192 ||||||| |||| ||| | |||| |||||| || ||||||||||| | |||| |||| Sbjct 376 AATAATAAAATAAGACATATGGTTTTATTTTATTAGTTTCTAGGACTACTATAATAATTA 317 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 ||| | ||||| || || | |||||| |||| | |||||| |||||||| |||||||| Sbjct 316 ATAAGAATAGTTAGGAGTATTAGTATTTAATTATTAGAGGTAAAATTCTTAGATTTATTA 257 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||||||||||||| ||||| || || |||||| |||| |||||| || ||| ||||| Sbjct 256 AAGACTAACTACTAAAAAAGCATTTACTAAGGATATTTTTATTAATTAG-GAATAAAAGT 198 Query 313 TAGGGG 318 |||||| Sbjct 197 TAGGGG 192 >seq939 Length=8709 Score = 214 bits (236), Expect = 3e-53 Identities = 198/250 (79%), Gaps = 1/250 (0%) Strand=Plus/Minus Query 69 GGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGC 128 ||||||||||||| |||||||||||||| | | | | || | |||| |||| ||||| Sbjct 8709 GGACTTTTACTTTAAAAAAATTAGAGTGCTTTAGGTAAGCTTATGCTTAAATATATTAGT 8650 Query 129 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 || |||||||| |||| || | |||| |||||| || |||||||||| | |||| Sbjct 8649 ATAGAATAATAAAATAAGATATATGGTTTTATTTTATTAGTTTCTAGGATTACTATAATA 8590 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||||| ||||||| ||||| | |||||| |||| | | ||||||||||||||||||| Sbjct 8589 ATTAATAAGGATAGTTAGGGGTATTAGTATTTAATTATTAAAGGTGAAATTCTTGGATTT 8530 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 ||| |||||||| |||| |||| || || ||||||||||| |||||| || ||| | Sbjct 8529 ATTAAAGACTAATTACTATAAAAGTATTTACTAAGGATGTTTTTATTAATTAG-GAATAA 8471 Query 309 AAGTTAGGGG 318 |||||||||| Sbjct 8470 AAGTTAGGGG 8461 >seq1771 Length=3138 Score = 208 bits (230), Expect = 1e-51 Identities = 228/302 (75%), Gaps = 1/302 (0%) Strand=Plus/Minus Query 16 GGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTT 75 ||||||||| ||| | || |||||||| ||| || | ||| |||||||| Sbjct 493 GGCCTTTCCCTCTATAAAACCCTATGCCCTTTACTAGGCATAGTAAGGAAATAGGACTTT 434 Query 76 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAAT 135 |||||| |||| ||||||||| | | |||||| | |||| |||| ||||| || |||| Sbjct 433 TACTTTAAAAATATTAGAGTGCTTTAGGCAGGCTTATGCTTAAATATATTAGTATAGAAT 374 Query 136 AATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATA 195 |||| |||| ||| ||| |||||| || ||||||||||| | |||| ||||||| Sbjct 373 AATAAAATAAAACGCATAGTTTTATTTTATTAGTTTCTAGGACTACTATAATAATTAATA 314 Query 196 GGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAG 255 |||||||| ||||| | |||||| |||| | | |||| |||||||| |||||||| ||| Sbjct 313 GGGATAGTTAGGGGTATTAGTATTGAATTATTAAAGGTAAAATTCTTAGATTTATTAAAG 254 Query 256 ACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 |||||||||| |||| || | |||||| |||| |||||| | ||| |||||||| Sbjct 253 ACTAACTACTATAAAAGTATTTGCTAAGGATATTTTTATTAATTA-AAAACAAAAGTTAG 195 Query 316 GG 317 || Sbjct 194 GG 193 >seq1868 Length=2737 Score = 190 bits (210), Expect = 4e-46 Identities = 170/212 (80%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 107 GCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTT 166 |||| |||| |||| |||||||| |||||||| |||||||| | |||| |||||| || Sbjct 3 GCCTATGCTTAAATATATTAGCATAGAATAATAAAATAGGACACGTGGTTTTATTTTATT 62 Query 167 GGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGT 226 ||||||| ||| | |||| ||||||| ||||||| ||||| | |||||| |||| | Sbjct 63 AGTTTCTAAGACTACTATAATAATTAATAAGGATAGTTAGGGGTATTAGTATTTAATTAT 122 Query 227 CAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGAT 286 ||||||||||||||| |||||||| |||||||| |||| ||||| || || ||| || Sbjct 123 TAGAGGTGAAATTCTTAGATTTATTAAAGACTAATTACTATAAAAGCATTTACTAAGAAT 182 Query 287 GTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||| |||||| || || ||||||||||| Sbjct 183 GTTTTTATTAATTAG-AAATAAAAGTTAGGGG 213 >seq35803 Length=206 Score = 167 bits (184), Expect = 4e-39 Identities = 149/187 (80%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 ||| | || |||||||| || || ||||| || |||||||||| ||| | | ||| | Sbjct 187 TGGCCGGGGCGGGCCTTCCCCTCGGGGGACCCCCATGCCCTTCGGGGGGGGGGGGGGGAA 128 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 |||||||||| ||| |||||||| ||||| || || ||||| ||| ||||||||| Sbjct 127 AACAGGACTTTTTCTTGAAAAAAATTGGAGTGCTCCGGGCGGGCCTATGCGCGAATACAT 68 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 ||||||||||||| ||| || || ||| |||| |||||||| |||||||||||||||| Sbjct 67 TAGCATGGAATAAGGAAATGGGGCGCGCGTTTCTTTTTTGTTGTTTTCTAGGACCGCCGT 8 Query 185 AATGATT 191 ||||||| Sbjct 7 AATGATT 1 >seq1046 Length=7630 Score = 159 bits (176), Expect = 6e-37 Identities = 164/212 (77%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 107 GCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTT 166 |||| |||| |||| ||||| || ||||||| |||| ||| |||| ||| || || Sbjct 7628 GCCTATGCTTAAATATATTAGTATAAAATAATAAAATAA-ACGCATGGTTTTATCTTATT 7570 Query 167 GGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGT 226 ||||||||||| | |||| ||||||| ||||||| ||||| | |||||| |||| | Sbjct 7569 AGTTTCTAGGACTACTATAATAATTAATAAGGATAGTTAGGGGTATTAGTATTTAATTAT 7510 Query 227 CAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGAT 286 | |||| |||||||| |||||||| |||||||| |||| ||||| || || |||||| Sbjct 7509 TAAAGGTAAAATTCTTAGATTTATTAAAGACTAATTACTATAAAAGCATTTACTAAGGAT 7450 Query 287 GTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||| |||||| || ||| ||||||| ||| Sbjct 7449 ATTTTTATTAATTAG-GAATAAAAGTTAAGGG 7419 >seq9905 Length=425 Score = 75.2 bits (82), Expect = 2e-11 Identities = 73/93 (78%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 ||| |||||||||||||||| ||| || || ||||||||||||| || | | |||||| Sbjct 319 TGGGCCGGCCGGGCCTTTCCCCCTGTGGTACCCCATGCCCTTCACTCGGCGCGGCGGGGA 378 Query 65 GCCAGGACTTTTACT-TTGAAAAAATTAGAGTG 96 |||||| |||||| ||| | || |||||| Sbjct 379 AACAGGACATTTACTCTTGCAGCCATCAGAGTG 411 >seq12288 Length=380 Score = 73.4 bits (80), Expect = 7e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGG 62 ||||||||||||| |||||| |||| ||| || |||||||||||||||| ||| |||| Sbjct 58 TGGTCCGGCCGGGACTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGCGTGGCGGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914866290624