Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15]
36,463 sequences; 36,098,533 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq968 259 8e-67
seq17347 205 1e-50
seq23946 179 6e-43
seq1724 120 5e-25
seq2454 111 3e-22
seq1046 111 3e-22
seq1868 105 1e-20
seq939 102 1e-19
seq36183 86.0 1e-14
>seq968
Length=8442
Score = 259 bits (286), Expect = 8e-67
Identities = 179/199 (90%), Gaps = 3/199 (2%)
Strand=Plus/Plus
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| ||
Sbjct 5945 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGC 6003
Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| ||| || | || |||||||||||||||||||||||||||||||||||| ||||
Sbjct 6004 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 6062
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
|| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 6063 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 6122
Query 240 AAAGAGCTATCAATCTGTC 258
|||||||| ||||||||||
Sbjct 6123 AAAGAGCTCTCAATCTGTC 6141
Score = 104 bits (114), Expect = 4e-20
Identities = 59/60 (98%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5471 TACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 5530
>seq17347
Length=306
Score = 205 bits (226), Expect = 1e-50
Identities = 165/198 (83%), Gaps = 1/198 (1%)
Strand=Plus/Minus
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
||| |||||| |||||||||||||| || | | ||| |||||||||||| ||| || ||
Sbjct 268 ACCGGTTATTCCCTCAAACTTCCATCGGATTGG-GCCGATAGTCCCTCTATGAATCCGGC 210
Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180
| ||| || |||||||||||||||||| ||||||||||||||||| ||||
Sbjct 209 GTACTGCCAAAGCATTCCGGGCTATTTAGCAGGTTATGGTCTCGTTCGTTATCGCCATTA 150
Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240
| ||||||| ||||||| ||||||||||||||||||||||||||||||| | ||||||||
Sbjct 149 AGCAGACAACTCACTCCCCCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGA 90
Query 241 AAGAGCTATCAATCTGTC 258
|| |||| ||||||||||
Sbjct 89 AATAGCTCTCAATCTGTC 72
>seq23946
Length=242
Score = 179 bits (198), Expect = 6e-43
Identities = 141/166 (85%), Gaps = 2/166 (1%)
Strand=Plus/Plus
Query 94 AGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGG-GGCTATTTAGCAG 152
|||| |||||||| |||||||||| || | ||| || | || |||||||||||||
Sbjct 2 AGCCGATAGTCCCGCTAAGAAGCCGGCGTACTGCCAAAG-CAATACAGGCTATTTAGCAG 60
Query 153 GTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGG 212
| ||||| ||||||||||| || |||||| ||||||||||||||||||||| ||||||||
Sbjct 61 GGTAAGGGCTCGTTCGTTAGCGCAATTAAGCAGACAAATCACTCCACCAACAAAGAACGG 120
Query 213 CCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||| |||||| | ||||||||||||||| ||||||||||
Sbjct 121 ACATGCACCAACACCCACAAAATCAAGAAAGAGCTCTCAATCTGTC 166
>seq1724
Length=3335
Score = 120 bits (132), Expect = 5e-25
Identities = 140/188 (74%), Gaps = 1/188 (1%)
Strand=Plus/Minus
Query 66 TTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCA 125
||||| ||| |||||| ||| ||| |||| ||||||||||||||||||| ||| |
Sbjct 249 TTATTACCTTAAACTTTTATTAGCTT-AAGCTAATAGTCCCTCTAAGAAGCTAGCGTACT 191
Query 126 ACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185
|| | ||| ||||||||||||||||||||| | || |||| |||||| ||
Sbjct 190 ACTAAAGTAATACAGGCTATTTAGCAGGTTAAGGTTTTATTTATTATTATAATTAAGCAA 131
Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245
| |||||||| || ||||||||| || || || || ||| ||| ||| |||||| ||
Sbjct 130 ATAAATCACTTTACTAACTAAGAATAGCTATATACTACTACCTATAAAATTAAGAAAAAG 71
Query 246 CTATCAAT 253
|| | |||
Sbjct 70 CTCTTAAT 63
>seq2454
Length=1398
Score = 111 bits (122), Expect = 3e-22
Identities = 141/193 (73%), Gaps = 1/193 (1%)
Strand=Plus/Minus
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
|||| ||||| ||| ||||||| ||| ||| || | ||||||||||||||||||| ||
Sbjct 254 ACCTATTATTACCTTAAACTTCTATTAGCTTAAA-CTAATAGTCCCTCTAAGAAGCTAGT 196
Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180
|| | ||| |||||||||| | |||||||||| || |||| |||||
Sbjct 195 GTATTACTAAAGTAATATAGGCTATTTAGTAAGTTAAGGTCTTATTTATTATTATAATTA 136
Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240
| |||| |||||||| || ||||||||| || || | || ||| ||| ||| ||||
Sbjct 135 AGCAGATAAATCACTTTACTAACTAAGAATAGCTATATATTACTACCTATAAAATTAAGA 76
Query 241 AAGAGCTATCAAT 253
|| |||| | |||
Sbjct 75 AAAAGCTCTTAAT 63
>seq1046
Length=7630
Score = 111 bits (122), Expect = 3e-22
Identities = 138/188 (73%), Gaps = 1/188 (1%)
Strand=Plus/Plus
Query 66 TTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCA 125
||||| ||| |||||| ||| ||| |||| |||| |||||||||||||| ||| |
Sbjct 6983 TTATTACCTTAAACTTTTATTAGCTT-AAGCTAATAATCCCTCTAAGAAGCTAGCGTACT 7041
Query 126 ACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185
|| | ||| |||||||||| | |||||||||| || |||| |||||| |
Sbjct 7042 ACTAAAGTAATATAGGCTATTTAGTAAGTTAAGGTCTTATTTATTATTATAATTAAGTAA 7101
Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245
| |||| ||| || ||||||||| || |||||| || ||| ||| ||| |||||| ||
Sbjct 7102 ATAAATTACTTTACTAACTAAGAATAGCTATGCACTACTACCTATAAAATTAAGAAAAAG 7161
Query 246 CTATCAAT 253
|| | |||
Sbjct 7162 CTCTTAAT 7169
>seq1868
Length=2737
Score = 105 bits (116), Expect = 1e-20
Identities = 137/188 (73%), Gaps = 1/188 (1%)
Strand=Plus/Minus
Query 66 TTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCA 125
||||| ||| ||||||| ||| ||| |||| |||| |||||||||||||| || |
Sbjct 649 TTATTACCTTAAACTTCTATTAGCTT-AAGCTAATAATCCCTCTAAGAAGCTAGTATACT 591
Query 126 ACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185
|| | ||| ||||||||||| |||||||||| || |||| |||||| ||
Sbjct 590 ACTAAAGTAATATAAGCTATTTAGCAAGTTAAGGTCTTATTTATTATTATAATTAAGCAA 531
Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245
| |||| ||| || ||||||||| || ||| | || ||| ||| ||| |||||| ||
Sbjct 530 ATAAATTACTTTACTAACTAAGAATAGCTATGTATTACTACCTATAAAATTAAGAAAAAG 471
Query 246 CTATCAAT 253
|| | |||
Sbjct 470 CTCTTAAT 463
>seq939
Length=8709
Score = 102 bits (112), Expect = 1e-19
Identities = 136/188 (72%), Gaps = 1/188 (1%)
Strand=Plus/Plus
Query 66 TTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCA 125
||||| ||| ||||||| ||| ||| |||| |||| |||||||||||||| ||
Sbjct 8025 TTATTACCTTAAACTTCTATTAGCTT-AAGCTAATAATCCCTCTAAGAAGCTAGTATATT 8083
Query 126 ACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185
|| | ||| |||||||||| | |||||||||| || |||| |||||| |
Sbjct 8084 ACTAAAGTAATATAGGCTATTTAGTAAGTTAAGGTCTTATTTATTATTATAATTAAGTAA 8143
Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245
| |||| ||| || ||||||||| || || ||| || ||| ||| ||| |||||| ||
Sbjct 8144 ATAAATTACTTTACTAACTAAGAATAGCTATACACTACTACCTATAAAATTAAGAAAAAG 8203
Query 246 CTATCAAT 253
|| | |||
Sbjct 8204 CTCTTAAT 8211
>seq36183
Length=202
Score = 86.0 bits (94), Expect = 1e-14
Identities = 55/60 (92%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
||| || ||||||||||||||| ||||||||||||||| |||| ||||||||||||||||
Sbjct 162 TACGCGCTGGCTCCGTCAGTGTGGCGCGCGTGCGGCCCGGAACGTCTAAGGGCATCACAG 103
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796518542103
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |