Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq968 259 8e-67 seq17347 205 1e-50 seq23946 179 6e-43 seq1724 120 5e-25 seq2454 111 3e-22 seq1046 111 3e-22 seq1868 105 1e-20 seq939 102 1e-19 seq36183 86.0 1e-14 >seq968 Length=8442 Score = 259 bits (286), Expect = 8e-67 Identities = 179/199 (90%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 5945 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGC 6003 Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | ||| || | || |||||||||||||||||||||||||||||||||||| |||| Sbjct 6004 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 6062 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 || ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 6063 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 6122 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| |||||||||| Sbjct 6123 AAAGAGCTCTCAATCTGTC 6141 Score = 104 bits (114), Expect = 4e-20 Identities = 59/60 (98%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5471 TACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 5530 >seq17347 Length=306 Score = 205 bits (226), Expect = 1e-50 Identities = 165/198 (83%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||| |||||| |||||||||||||| || | | ||| |||||||||||| ||| || || Sbjct 268 ACCGGTTATTCCCTCAAACTTCCATCGGATTGG-GCCGATAGTCCCTCTATGAATCCGGC 210 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | ||| || |||||||||||||||||| ||||||||||||||||| |||| Sbjct 209 GTACTGCCAAAGCATTCCGGGCTATTTAGCAGGTTATGGTCTCGTTCGTTATCGCCATTA 150 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||||||| ||||||| ||||||||||||||||||||||||||||||| | |||||||| Sbjct 149 AGCAGACAACTCACTCCCCCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGA 90 Query 241 AAGAGCTATCAATCTGTC 258 || |||| |||||||||| Sbjct 89 AATAGCTCTCAATCTGTC 72 >seq23946 Length=242 Score = 179 bits (198), Expect = 6e-43 Identities = 141/166 (85%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 94 AGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGG-GGCTATTTAGCAG 152 |||| |||||||| |||||||||| || | ||| || | || ||||||||||||| Sbjct 2 AGCCGATAGTCCCGCTAAGAAGCCGGCGTACTGCCAAAG-CAATACAGGCTATTTAGCAG 60 Query 153 GTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGG 212 | ||||| ||||||||||| || |||||| ||||||||||||||||||||| |||||||| Sbjct 61 GGTAAGGGCTCGTTCGTTAGCGCAATTAAGCAGACAAATCACTCCACCAACAAAGAACGG 120 Query 213 CCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||| |||||| | ||||||||||||||| |||||||||| Sbjct 121 ACATGCACCAACACCCACAAAATCAAGAAAGAGCTCTCAATCTGTC 166 >seq1724 Length=3335 Score = 120 bits (132), Expect = 5e-25 Identities = 140/188 (74%), Gaps = 1/188 (1%) Strand=Plus/Minus Query 66 TTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCA 125 ||||| ||| |||||| ||| ||| |||| ||||||||||||||||||| ||| | Sbjct 249 TTATTACCTTAAACTTTTATTAGCTT-AAGCTAATAGTCCCTCTAAGAAGCTAGCGTACT 191 Query 126 ACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 || | ||| ||||||||||||||||||||| | || |||| |||||| || Sbjct 190 ACTAAAGTAATACAGGCTATTTAGCAGGTTAAGGTTTTATTTATTATTATAATTAAGCAA 131 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 | |||||||| || ||||||||| || || || || ||| ||| ||| |||||| || Sbjct 130 ATAAATCACTTTACTAACTAAGAATAGCTATATACTACTACCTATAAAATTAAGAAAAAG 71 Query 246 CTATCAAT 253 || | ||| Sbjct 70 CTCTTAAT 63 >seq2454 Length=1398 Score = 111 bits (122), Expect = 3e-22 Identities = 141/193 (73%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||| ||||| ||| ||||||| ||| ||| || | ||||||||||||||||||| || Sbjct 254 ACCTATTATTACCTTAAACTTCTATTAGCTTAAA-CTAATAGTCCCTCTAAGAAGCTAGT 196 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 || | ||| |||||||||| | |||||||||| || |||| ||||| Sbjct 195 GTATTACTAAAGTAATATAGGCTATTTAGTAAGTTAAGGTCTTATTTATTATTATAATTA 136 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | |||| |||||||| || ||||||||| || || | || ||| ||| ||| |||| Sbjct 135 AGCAGATAAATCACTTTACTAACTAAGAATAGCTATATATTACTACCTATAAAATTAAGA 76 Query 241 AAGAGCTATCAAT 253 || |||| | ||| Sbjct 75 AAAAGCTCTTAAT 63 >seq1046 Length=7630 Score = 111 bits (122), Expect = 3e-22 Identities = 138/188 (73%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 66 TTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCA 125 ||||| ||| |||||| ||| ||| |||| |||| |||||||||||||| ||| | Sbjct 6983 TTATTACCTTAAACTTTTATTAGCTT-AAGCTAATAATCCCTCTAAGAAGCTAGCGTACT 7041 Query 126 ACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 || | ||| |||||||||| | |||||||||| || |||| |||||| | Sbjct 7042 ACTAAAGTAATATAGGCTATTTAGTAAGTTAAGGTCTTATTTATTATTATAATTAAGTAA 7101 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 | |||| ||| || ||||||||| || |||||| || ||| ||| ||| |||||| || Sbjct 7102 ATAAATTACTTTACTAACTAAGAATAGCTATGCACTACTACCTATAAAATTAAGAAAAAG 7161 Query 246 CTATCAAT 253 || | ||| Sbjct 7162 CTCTTAAT 7169 >seq1868 Length=2737 Score = 105 bits (116), Expect = 1e-20 Identities = 137/188 (73%), Gaps = 1/188 (1%) Strand=Plus/Minus Query 66 TTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCA 125 ||||| ||| ||||||| ||| ||| |||| |||| |||||||||||||| || | Sbjct 649 TTATTACCTTAAACTTCTATTAGCTT-AAGCTAATAATCCCTCTAAGAAGCTAGTATACT 591 Query 126 ACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 || | ||| ||||||||||| |||||||||| || |||| |||||| || Sbjct 590 ACTAAAGTAATATAAGCTATTTAGCAAGTTAAGGTCTTATTTATTATTATAATTAAGCAA 531 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 | |||| ||| || ||||||||| || ||| | || ||| ||| ||| |||||| || Sbjct 530 ATAAATTACTTTACTAACTAAGAATAGCTATGTATTACTACCTATAAAATTAAGAAAAAG 471 Query 246 CTATCAAT 253 || | ||| Sbjct 470 CTCTTAAT 463 >seq939 Length=8709 Score = 102 bits (112), Expect = 1e-19 Identities = 136/188 (72%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 66 TTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCA 125 ||||| ||| ||||||| ||| ||| |||| |||| |||||||||||||| || Sbjct 8025 TTATTACCTTAAACTTCTATTAGCTT-AAGCTAATAATCCCTCTAAGAAGCTAGTATATT 8083 Query 126 ACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 || | ||| |||||||||| | |||||||||| || |||| |||||| | Sbjct 8084 ACTAAAGTAATATAGGCTATTTAGTAAGTTAAGGTCTTATTTATTATTATAATTAAGTAA 8143 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 | |||| ||| || ||||||||| || || ||| || ||| ||| ||| |||||| || Sbjct 8144 ATAAATTACTTTACTAACTAAGAATAGCTATACACTACTACCTATAAAATTAAGAAAAAG 8203 Query 246 CTATCAAT 253 || | ||| Sbjct 8204 CTCTTAAT 8211 >seq36183 Length=202 Score = 86.0 bits (94), Expect = 1e-14 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 ||| || ||||||||||||||| ||||||||||||||| |||| |||||||||||||||| Sbjct 162 TACGCGCTGGCTCCGTCAGTGTGGCGCGCGTGCGGCCCGGAACGTCTAAGGGCATCACAG 103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796518542103