Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq968 354 1e-95 seq7616 288 2e-75 seq2845 215 9e-54 seq21686 212 1e-52 seq1421 183 5e-44 seq939 170 3e-40 seq1477 167 4e-39 seq10504 159 6e-37 seq16424 140 6e-31 seq6198 140 6e-31 seq1761 134 2e-29 seq27675 113 8e-23 seq21265 109 9e-22 seq1486 109 9e-22 seq8596 102 1e-19 seq10322 86.0 1e-14 seq1046 84.2 4e-14 seq482 75.2 2e-11 >seq968 Length=8442 Score = 354 bits (392), Expect = 1e-95 Identities = 201/204 (99%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1765 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 1824 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 1825 ATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCC 1884 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1885 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATGTCGAGGGACTAAAGGATCGATAGGC 1944 Query 272 CACACTTTCATGGTTTGTATTCAC 295 |||||||||||||||||||||||| Sbjct 1945 CACACTTTCATGGTTTGTATTCAC 1968 Score = 140 bits (154), Expect = 6e-31 Identities = 87/92 (95%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| |||||||||||| || || |||||||||||||||||||||||||||||||| Sbjct 1298 TACTAAGCTGAATTACCATTGCGGTGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 1356 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||||||||||||||||||||||||||||| Sbjct 1357 CGACGGTCTAAACCCAGCTCACGTTCCCTATT 1388 >seq7616 Length=491 Score = 288 bits (318), Expect = 2e-75 Identities = 173/182 (95%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 310 TAGGGGGTGAACAATCCAACGCTTACCGAATTCGGCTTCGGTATGATAGGAAGAGCAGAC 369 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 | |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 370 ACCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCC 429 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 430 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAACGTCGTGGGACTAAAGGATCGATAGGC 489 Query 272 CA 273 || Sbjct 490 CA 491 >seq2845 Length=1040 Score = 215 bits (238), Expect = 9e-54 Identities = 170/204 (83%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||| ||| ||||||| ||||||||| |||||| ||| |||| ||||||| ||| || Sbjct 392 TAGTAGGTAAACAATCTAACGCTTACTAAATTCTACTTTAGTATAATAGGAAAAGCTAAC 333 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 || ||||||||||||||||||| |||| ||||||| ||| | |||||| ||||||||| Sbjct 332 ATTAAAGGATCAAAAAGCAACGTTACTATAAACGCTTAGCTACTACAAGCTAGTTATCCC 273 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 | | ||||||||||| |||||| |||||| |||| | |||||||||||||| |||||| Sbjct 272 TATAGTAACTTTTCTAGCACCTTTAGCCTTAAATATTAAGGGACTAAAGGATTAATAGGC 213 Query 272 CACACTTTCATGGTTTGTATTCAC 295 || ||||||||||||| |||| || Sbjct 212 CATACTTTCATGGTTTATATTTAC 189 Score = 100 bits (110), Expect = 5e-19 Identities = 78/92 (85%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| ||||||| |||| || || ||| || |||| |||||||||||||||||| | Sbjct 859 TACTAAGCTGAATTACTATTGCGGTGA-GGTTATTAGTAAGGTAAAACTAACCTGTCTTA 801 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 | | ||||||||| ||||||| ||||||||| Sbjct 800 TAATAGTCTAAACCTAGCTCACATTCCCTATT 769 >seq21686 Length=255 Score = 212 bits (234), Expect = 1e-52 Identities = 159/187 (85%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 || ||||| |||| |||| |||||| || |||||| || | |||| ||| ||| |||||| Sbjct 187 TATTGGGTTAACATTCCATCGCTTATCGCATTCTGTTTTGTTATGTTAGTAAGCGCCGAC 128 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 || | | | ||||||||| || ||||||||| |||||||| ||||||| ||||||||||| Sbjct 127 ATTGTATGGTCAAAAAGCGACTTCGCTATGATCGCTTGGCCGCCACAATCCAGTTATCCC 68 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 |||| ||||||||||||||||||| ||||||| | ||||||||||||||||| |||||| Sbjct 67 TGTGTTAACTTTTCTGGCACCTCTTGCCTCAATTGTCGAGGGACTAAAGGATAGATAGGA 8 Query 272 CACACTT 278 |||||| Sbjct 7 TACACTT 1 >seq1421 Length=4921 Score = 183 bits (202), Expect = 5e-44 Identities = 161/201 (80%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||| || || |||| || |||||| |||||| ||| |||| |||| || ||| | Sbjct 3644 TAGTAAGTAAATAATCTAATGCTTACTAAATTCTACTTTAGTATAATAGAAAAAGCTAAT 3703 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 ||| |||||| |||||| || || ||||| ||||||| ||| ||| |||| ||||||||| Sbjct 3704 ATCAAAGGATTAAAAAGTAATGTTGCTATAAACGCTTAGCTACCATAAGCTAGTTATCCC 3763 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 | | ||||||||||| ||||||||||||| |||| | |||||||||||||| |||||| Sbjct 3764 TATAGTAACTTTTCTAGCACCTCTAGCCTTAAATATTAAGGGACTAAAGGATTAATAGGC 3823 Query 272 CACACTTTCATGGTTTGTATT 292 | ||||| ||||||| |||| Sbjct 3824 TATACTTTTATGGTTTATATT 3844 >seq939 Length=8709 Score = 170 bits (188), Expect = 3e-40 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||| || || |||| || |||||| |||| ||||| |||| |||| || ||| | Sbjct 3839 TTAGTAAGTAAATAATCTAATGCTTACTAAATTTTGCTTTAGTATAATAGAAAAAGCTAA 3898 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 || |||||| |||||| ||||| |||| || |||| ||| | | |||| |||||||| Sbjct 3899 TATTAAAGGATTAAAAAGTAACGTTACTATAAATGCTTAGCTACTATAAGCTAGTTATCC 3958 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 || ||||||||||||| | ||||||||||| |||| | |||||||||||||| ||| | Sbjct 3959 CTATGGTAACTTTTCTAGTACCTCTAGCCTTAAATATTAAGGGACTAAAGGATTAATAAG 4018 Query 271 CCACACTTTCATGGTTTGTATT 292 ||||||||| || |||| |||| Sbjct 4019 CCACACTTTTATAGTTTATATT 4040 >seq1477 Length=4556 Score = 167 bits (184), Expect = 4e-39 Identities = 160/205 (78%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||| || || |||| || ||||| |||| | ||| |||| ||||||||||| | Sbjct 820 TTAGTAAGTAAATAATCTAATACTTACTAAATTTTACTTTAGTATAATAGGAAGAGCTAA 761 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 || || || ||||||||| || ||||||| ||| ||||| | |||| |||||||| Sbjct 760 TATTAAAAAATTAAAAAGCAATGTTACTATGAATACTTAGCTGCTATAAGCTAGTTATCC 701 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 | | ||||||||||| ||||||||||||| |||| | |||||||||||||| ||||| Sbjct 700 TTATAGTAACTTTTCTAGCACCTCTAGCCTTAAATATTAAGGGACTAAAGGATTAATAGG 641 Query 271 CCACACTTTCATGGTTTGTATTCAC 295 | ||||||| || |||| ||||||| Sbjct 640 CTACACTTTTATAGTTTATATTCAC 616 >seq10504 Length=413 Score = 159 bits (176), Expect = 6e-37 Identities = 103/113 (91%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 183 ACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCA 242 |||| |||| |||||||||||||||||||||| ||| || | |||||||||| ||||||| Sbjct 413 ACGCGTGGCCGCCACAAGCCAGTTATCCCTGTTGTAGCTGTGCTGGCACCTCGAGCCTCA 354 Query 243 AATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 | | ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 353 ACTGTCGAGGGACTAGAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 301 >seq16424 Length=317 Score = 140 bits (154), Expect = 6e-31 Identities = 87/92 (95%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| |||||||||||| || || |||||||||||||||||||||||||||||||| Sbjct 35 TACTAAGCTGAATTACCATTGCGGTGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 93 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||||||||||||||||||||||||||||| Sbjct 94 CGACGGTCTAAACCCAGCTCACGTTCCCTATT 125 >seq6198 Length=546 Score = 140 bits (154), Expect = 6e-31 Identities = 87/92 (95%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| |||||||||||| || || |||||||||||||||||||||||||||||||| Sbjct 375 TACTAAGCTGAATTACCATTGCGGTGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 433 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||||||||||||||||||||||||||||| Sbjct 434 CGACGGTCTAAACCCAGCTCACGTTCCCTATT 465 >seq1761 Length=3190 Score = 134 bits (148), Expect = 2e-29 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||| ||| || |||| || ||||| |||| | ||| |||| ||| |||||| | Sbjct 1930 TAGTAGGTAAATAATCTAATACTTACTAAATTTTACTTTAGTATAATAAAAAGAGCTAAT 1989 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 || ||| || |||||| || | |||| ||||||| ||| | | |||| |||||| || Sbjct 1990 ATTAAAGAATTAAAAAGTAATATTACTATAAACGCTTAGCTACTATAAGCTAGTTATTCC 2049 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 | | ||||||||||| ||||| ||||||| |||| | ||||||||||| || ||| || Sbjct 2050 TATAGTAACTTTTCTAGCACCCCTAGCCTTAAATATTAAGGGACTAAAGAATTAATAAGC 2109 Query 272 CACACTTTCATGGTTTGTATTCAC 295 | ||||| || |||| |||| || Sbjct 2110 TATACTTTTATAGTTTATATTTAC 2133 >seq27675 Length=230 Score = 113 bits (124), Expect = 8e-23 Identities = 81/92 (88%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||| ||| |||||||||||| || | | ||||||||||| |||||||||||||||||| Sbjct 145 TACTCAGCTGAATTACCATTGCGGTGT-GTTCATCAGTAGGTTAAAACTAACCTGTCTCA 87 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||||||||| ||||||||||||||| ||| Sbjct 86 CGACGGTCTAAATCCAGCTCACGTTCCCGATT 55 >seq21265 Length=259 Score = 109 bits (120), Expect = 9e-22 Identities = 80/92 (87%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| | |||||||||| || || ||||||||||||| |||||||||||||||| Sbjct 235 TACTAAGCTGCATTACCATTGCGGTGA-GGTCATCAGTAGGATAAAACTAACCTGTCTGC 177 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||| ||| |||| ||||||||||| Sbjct 176 CGACGGTCTAAGCCCCGCTCGCGTTCCCTATT 145 >seq1486 Length=4521 Score = 109 bits (120), Expect = 9e-22 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||| ||| || |||| || |||||| |||| | ||| |||| ||||||||||| || Sbjct 940 TAGTAGGTAAATAATCTAATGCTTACTAAATTTTACTTTAGTATAATAGGAAGAGCTAAC 999 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206 || |||||| |||||||||||| |||||||| |||| ||||||| |||| |||| Sbjct 1000 ATTAAAGGATTAAAAAGCAACGTTGCTATGAATGCTTAGCTGCCATAAGCTAGTT 1054 Score = 104 bits (114), Expect = 4e-20 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 216 GTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACA 275 ||||||||||| ||||||||||||| |||| | |||||||||||||| |||||| ||| Sbjct 1505 GTAACTTTTCTAGCACCTCTAGCCTTAAATATTAAGGGACTAAAGGATTAATAGGCTACA 1564 Query 276 CTTTCATGGTTTGTATTCAC 295 |||||||||||| ||||||| Sbjct 1565 CTTTCATGGTTTATATTCAC 1584 >seq8596 Length=459 Score = 102 bits (112), Expect = 1e-19 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 205 TTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATC 264 ||| |||| | ||||||||||| |||||| |||||| |||| | |||||||||||||| Sbjct 27 TTAACCCTATAGTAACTTTTCTAGCACCTTTAGCCTTAAATATTAAGGGACTAAAGGATT 86 Query 265 GATAGGCCACACTTTCATGGTTTGTATTCAC 295 |||||||| ||||||||||||| |||| || Sbjct 87 AATAGGCCATACTTTCATGGTTTATATTTAC 117 >seq10322 Length=417 Score = 86.0 bits (94), Expect = 1e-14 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 |||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 12 CTCAAACGTCGAGCGACTAGAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 68 >seq1046 Length=7630 Score = 84.2 bits (92), Expect = 4e-14 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGA 266 || ||| | ||||||||||| |||||| |||||| |||| | |||||||||||||| | Sbjct 2913 ATTCCTATAGTAACTTTTCTAGCACCTTTAGCCTTAAATATTAAGGGACTAAAGGATTAA 2972 Query 267 TAGGCCACACTTTCATGGTTTGTATTCAC 295 || || | ||||| || |||| ||||||| Sbjct 2973 TAAGCTATACTTTTATAGTTTATATTCAC 3001 Score = 73.4 bits (80), Expect = 7e-11 Identities = 72/92 (78%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| |||||| ||| | | ||| || |||| |||||||||||||| ||| | Sbjct 1889 TACTAAGCTAAATTACTATTATAGTAA-GGTTATTAGTAAGGTAAAACTAACCTATCTTA 1947 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 | | ||||||||| |||| ||||||| |||| Sbjct 1948 TAATAGTCTAAACCTAGCTTACGTTCCTTATT 1979 >seq482 Length=16047 Score = 75.2 bits (82), Expect = 2e-11 Identities = 70/89 (79%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGA 266 |||| | | ||||||||||| | | |||||||| |||| | |||||||||||||| | Sbjct 1406 ATCCTTATAGTAACTTTTCTAGTATTTCTAGCCTTAAATATTAAGGGACTAAAGGATTAA 1465 Query 267 TAGGCCACACTTTCATGGTTTGTATTCAC 295 || || ||||||| || |||| |||| || Sbjct 1466 TAAGCTACACTTTTATAGTTTATATTTAC 1494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854088460128