Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15]
36,463 sequences; 36,098,533 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq968 354 1e-95
seq7616 288 2e-75
seq2845 215 9e-54
seq21686 212 1e-52
seq1421 183 5e-44
seq939 170 3e-40
seq1477 167 4e-39
seq10504 159 6e-37
seq16424 140 6e-31
seq6198 140 6e-31
seq1761 134 2e-29
seq27675 113 8e-23
seq21265 109 9e-22
seq1486 109 9e-22
seq8596 102 1e-19
seq10322 86.0 1e-14
seq1046 84.2 4e-14
seq482 75.2 2e-11
>seq968
Length=8442
Score = 354 bits (392), Expect = 1e-95
Identities = 201/204 (99%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1765 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 1824
Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1825 ATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCC 1884
Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1885 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATGTCGAGGGACTAAAGGATCGATAGGC 1944
Query 272 CACACTTTCATGGTTTGTATTCAC 295
||||||||||||||||||||||||
Sbjct 1945 CACACTTTCATGGTTTGTATTCAC 1968
Score = 140 bits (154), Expect = 6e-31
Identities = 87/92 (95%), Gaps = 1/92 (1%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| |||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 1298 TACTAAGCTGAATTACCATTGCGGTGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 1356
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92
|||||||||||||||||||||||||||||||
Sbjct 1357 CGACGGTCTAAACCCAGCTCACGTTCCCTATT 1388
>seq7616
Length=491
Score = 288 bits (318), Expect = 2e-75
Identities = 173/182 (95%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151
||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 310 TAGGGGGTGAACAATCCAACGCTTACCGAATTCGGCTTCGGTATGATAGGAAGAGCAGAC 369
Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211
| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 370 ACCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCC 429
Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 430 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAACGTCGTGGGACTAAAGGATCGATAGGC 489
Query 272 CA 273
||
Sbjct 490 CA 491
>seq2845
Length=1040
Score = 215 bits (238), Expect = 9e-54
Identities = 170/204 (83%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151
|||| ||| ||||||| ||||||||| |||||| ||| |||| ||||||| ||| ||
Sbjct 392 TAGTAGGTAAACAATCTAACGCTTACTAAATTCTACTTTAGTATAATAGGAAAAGCTAAC 333
Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211
|| ||||||||||||||||||| |||| ||||||| ||| | |||||| |||||||||
Sbjct 332 ATTAAAGGATCAAAAAGCAACGTTACTATAAACGCTTAGCTACTACAAGCTAGTTATCCC 273
Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271
| | ||||||||||| |||||| |||||| |||| | |||||||||||||| ||||||
Sbjct 272 TATAGTAACTTTTCTAGCACCTTTAGCCTTAAATATTAAGGGACTAAAGGATTAATAGGC 213
Query 272 CACACTTTCATGGTTTGTATTCAC 295
|| ||||||||||||| |||| ||
Sbjct 212 CATACTTTCATGGTTTATATTTAC 189
Score = 100 bits (110), Expect = 5e-19
Identities = 78/92 (85%), Gaps = 1/92 (1%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| ||||||| |||| || || ||| || |||| |||||||||||||||||| |
Sbjct 859 TACTAAGCTGAATTACTATTGCGGTGA-GGTTATTAGTAAGGTAAAACTAACCTGTCTTA 801
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92
| | ||||||||| ||||||| |||||||||
Sbjct 800 TAATAGTCTAAACCTAGCTCACATTCCCTATT 769
>seq21686
Length=255
Score = 212 bits (234), Expect = 1e-52
Identities = 159/187 (85%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151
|| ||||| |||| |||| |||||| || |||||| || | |||| ||| ||| ||||||
Sbjct 187 TATTGGGTTAACATTCCATCGCTTATCGCATTCTGTTTTGTTATGTTAGTAAGCGCCGAC 128
Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211
|| | | | ||||||||| || ||||||||| |||||||| ||||||| |||||||||||
Sbjct 127 ATTGTATGGTCAAAAAGCGACTTCGCTATGATCGCTTGGCCGCCACAATCCAGTTATCCC 68
Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271
|||| ||||||||||||||||||| ||||||| | ||||||||||||||||| ||||||
Sbjct 67 TGTGTTAACTTTTCTGGCACCTCTTGCCTCAATTGTCGAGGGACTAAAGGATAGATAGGA 8
Query 272 CACACTT 278
||||||
Sbjct 7 TACACTT 1
>seq1421
Length=4921
Score = 183 bits (202), Expect = 5e-44
Identities = 161/201 (80%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151
|||| || || |||| || |||||| |||||| ||| |||| |||| || ||| |
Sbjct 3644 TAGTAAGTAAATAATCTAATGCTTACTAAATTCTACTTTAGTATAATAGAAAAAGCTAAT 3703
Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211
||| |||||| |||||| || || ||||| ||||||| ||| ||| |||| |||||||||
Sbjct 3704 ATCAAAGGATTAAAAAGTAATGTTGCTATAAACGCTTAGCTACCATAAGCTAGTTATCCC 3763
Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271
| | ||||||||||| ||||||||||||| |||| | |||||||||||||| ||||||
Sbjct 3764 TATAGTAACTTTTCTAGCACCTCTAGCCTTAAATATTAAGGGACTAAAGGATTAATAGGC 3823
Query 272 CACACTTTCATGGTTTGTATT 292
| ||||| ||||||| ||||
Sbjct 3824 TATACTTTTATGGTTTATATT 3844
>seq939
Length=8709
Score = 170 bits (188), Expect = 3e-40
Identities = 159/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||| || || |||| || |||||| |||| ||||| |||| |||| || ||| |
Sbjct 3839 TTAGTAAGTAAATAATCTAATGCTTACTAAATTTTGCTTTAGTATAATAGAAAAAGCTAA 3898
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
|| |||||| |||||| ||||| |||| || |||| ||| | | |||| ||||||||
Sbjct 3899 TATTAAAGGATTAAAAAGTAACGTTACTATAAATGCTTAGCTACTATAAGCTAGTTATCC 3958
Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270
|| ||||||||||||| | ||||||||||| |||| | |||||||||||||| ||| |
Sbjct 3959 CTATGGTAACTTTTCTAGTACCTCTAGCCTTAAATATTAAGGGACTAAAGGATTAATAAG 4018
Query 271 CCACACTTTCATGGTTTGTATT 292
||||||||| || |||| ||||
Sbjct 4019 CCACACTTTTATAGTTTATATT 4040
>seq1477
Length=4556
Score = 167 bits (184), Expect = 4e-39
Identities = 160/205 (78%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||| || || |||| || ||||| |||| | ||| |||| ||||||||||| |
Sbjct 820 TTAGTAAGTAAATAATCTAATACTTACTAAATTTTACTTTAGTATAATAGGAAGAGCTAA 761
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
|| || || ||||||||| || ||||||| ||| ||||| | |||| ||||||||
Sbjct 760 TATTAAAAAATTAAAAAGCAATGTTACTATGAATACTTAGCTGCTATAAGCTAGTTATCC 701
Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270
| | ||||||||||| ||||||||||||| |||| | |||||||||||||| |||||
Sbjct 700 TTATAGTAACTTTTCTAGCACCTCTAGCCTTAAATATTAAGGGACTAAAGGATTAATAGG 641
Query 271 CCACACTTTCATGGTTTGTATTCAC 295
| ||||||| || |||| |||||||
Sbjct 640 CTACACTTTTATAGTTTATATTCAC 616
>seq10504
Length=413
Score = 159 bits (176), Expect = 6e-37
Identities = 103/113 (91%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 183 ACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCA 242
|||| |||| |||||||||||||||||||||| ||| || | |||||||||| |||||||
Sbjct 413 ACGCGTGGCCGCCACAAGCCAGTTATCCCTGTTGTAGCTGTGCTGGCACCTCGAGCCTCA 354
Query 243 AATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295
| | ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 353 ACTGTCGAGGGACTAGAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 301
>seq16424
Length=317
Score = 140 bits (154), Expect = 6e-31
Identities = 87/92 (95%), Gaps = 1/92 (1%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| |||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 35 TACTAAGCTGAATTACCATTGCGGTGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 93
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92
|||||||||||||||||||||||||||||||
Sbjct 94 CGACGGTCTAAACCCAGCTCACGTTCCCTATT 125
>seq6198
Length=546
Score = 140 bits (154), Expect = 6e-31
Identities = 87/92 (95%), Gaps = 1/92 (1%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| |||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 375 TACTAAGCTGAATTACCATTGCGGTGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 433
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92
|||||||||||||||||||||||||||||||
Sbjct 434 CGACGGTCTAAACCCAGCTCACGTTCCCTATT 465
>seq1761
Length=3190
Score = 134 bits (148), Expect = 2e-29
Identities = 152/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151
|||| ||| || |||| || ||||| |||| | ||| |||| ||| |||||| |
Sbjct 1930 TAGTAGGTAAATAATCTAATACTTACTAAATTTTACTTTAGTATAATAAAAAGAGCTAAT 1989
Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211
|| ||| || |||||| || | |||| ||||||| ||| | | |||| |||||| ||
Sbjct 1990 ATTAAAGAATTAAAAAGTAATATTACTATAAACGCTTAGCTACTATAAGCTAGTTATTCC 2049
Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271
| | ||||||||||| ||||| ||||||| |||| | ||||||||||| || ||| ||
Sbjct 2050 TATAGTAACTTTTCTAGCACCCCTAGCCTTAAATATTAAGGGACTAAAGAATTAATAAGC 2109
Query 272 CACACTTTCATGGTTTGTATTCAC 295
| ||||| || |||| |||| ||
Sbjct 2110 TATACTTTTATAGTTTATATTTAC 2133
>seq27675
Length=230
Score = 113 bits (124), Expect = 8e-23
Identities = 81/92 (88%), Gaps = 1/92 (1%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||| ||| |||||||||||| || | | ||||||||||| ||||||||||||||||||
Sbjct 145 TACTCAGCTGAATTACCATTGCGGTGT-GTTCATCAGTAGGTTAAAACTAACCTGTCTCA 87
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92
||||||||||| ||||||||||||||| |||
Sbjct 86 CGACGGTCTAAATCCAGCTCACGTTCCCGATT 55
>seq21265
Length=259
Score = 109 bits (120), Expect = 9e-22
Identities = 80/92 (87%), Gaps = 1/92 (1%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| | |||||||||| || || ||||||||||||| ||||||||||||||||
Sbjct 235 TACTAAGCTGCATTACCATTGCGGTGA-GGTCATCAGTAGGATAAAACTAACCTGTCTGC 177
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92
|||||||||| ||| |||| |||||||||||
Sbjct 176 CGACGGTCTAAGCCCCGCTCGCGTTCCCTATT 145
>seq1486
Length=4521
Score = 109 bits (120), Expect = 9e-22
Identities = 93/115 (81%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151
|||| ||| || |||| || |||||| |||| | ||| |||| ||||||||||| ||
Sbjct 940 TAGTAGGTAAATAATCTAATGCTTACTAAATTTTACTTTAGTATAATAGGAAGAGCTAAC 999
Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206
|| |||||| |||||||||||| |||||||| |||| ||||||| |||| ||||
Sbjct 1000 ATTAAAGGATTAAAAAGCAACGTTGCTATGAATGCTTAGCTGCCATAAGCTAGTT 1054
Score = 104 bits (114), Expect = 4e-20
Identities = 71/80 (89%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 216 GTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACA 275
||||||||||| ||||||||||||| |||| | |||||||||||||| |||||| |||
Sbjct 1505 GTAACTTTTCTAGCACCTCTAGCCTTAAATATTAAGGGACTAAAGGATTAATAGGCTACA 1564
Query 276 CTTTCATGGTTTGTATTCAC 295
|||||||||||| |||||||
Sbjct 1565 CTTTCATGGTTTATATTCAC 1584
>seq8596
Length=459
Score = 102 bits (112), Expect = 1e-19
Identities = 77/91 (85%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 205 TTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATC 264
||| |||| | ||||||||||| |||||| |||||| |||| | ||||||||||||||
Sbjct 27 TTAACCCTATAGTAACTTTTCTAGCACCTTTAGCCTTAAATATTAAGGGACTAAAGGATT 86
Query 265 GATAGGCCACACTTTCATGGTTTGTATTCAC 295
|||||||| ||||||||||||| |||| ||
Sbjct 87 AATAGGCCATACTTTCATGGTTTATATTTAC 117
>seq10322
Length=417
Score = 86.0 bits (94), Expect = 1e-14
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295
|||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 12 CTCAAACGTCGAGCGACTAGAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 68
>seq1046
Length=7630
Score = 84.2 bits (92), Expect = 4e-14
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGA 266
|| ||| | ||||||||||| |||||| |||||| |||| | |||||||||||||| |
Sbjct 2913 ATTCCTATAGTAACTTTTCTAGCACCTTTAGCCTTAAATATTAAGGGACTAAAGGATTAA 2972
Query 267 TAGGCCACACTTTCATGGTTTGTATTCAC 295
|| || | ||||| || |||| |||||||
Sbjct 2973 TAAGCTATACTTTTATAGTTTATATTCAC 3001
Score = 73.4 bits (80), Expect = 7e-11
Identities = 72/92 (78%), Gaps = 1/92 (1%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| |||||| ||| | | ||| || |||| |||||||||||||| ||| |
Sbjct 1889 TACTAAGCTAAATTACTATTATAGTAA-GGTTATTAGTAAGGTAAAACTAACCTATCTTA 1947
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92
| | ||||||||| |||| ||||||| ||||
Sbjct 1948 TAATAGTCTAAACCTAGCTTACGTTCCTTATT 1979
>seq482
Length=16047
Score = 75.2 bits (82), Expect = 2e-11
Identities = 70/89 (79%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGA 266
|||| | | ||||||||||| | | |||||||| |||| | |||||||||||||| |
Sbjct 1406 ATCCTTATAGTAACTTTTCTAGTATTTCTAGCCTTAAATATTAAGGGACTAAAGGATTAA 1465
Query 267 TAGGCCACACTTTCATGGTTTGTATTCAC 295
|| || ||||||| || |||| |||| ||
Sbjct 1466 TAAGCTACACTTTTATAGTTTATATTTAC 1494
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854088460128
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |