Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq14514 197 5e-48 seq25806 145 3e-32 seq22546 123 9e-26 >seq14514 Length=344 Score = 197 bits (218), Expect = 5e-48 Identities = 267/360 (74%), Gaps = 24/360 (7%) Strand=Plus/Plus Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCG 266 ||||||||| | |||||||| | | ||||||| ||||||| || ||||| | Sbjct 1 AGGTCATCCGAAGACTTTTCAACGTCAACCGGTTCGGACCTCCACTATGTGTTACCACAG 60 Query 267 CTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCC--ACTCATA- 323 ||||| ||||||||||| |||||||| | |||| |||| | | | | ||| ||| Sbjct 61 CTTCATCCTGCCCATGGGTAGATCACACGGTTTCGCGTCT--ACCATTACTGACT-ATAG 117 Query 324 CGCCCTATTCGGACTCGCTTTCGCTACGGCT--ACCCCACACGGG-TTAACCTCGCGACA 380 |||||||||| |||||||||||||||||| | || || | | | ||| ||| || | Sbjct 118 CGCCCTATTCAGACTCGCTTTCGCTACGGATCCACACCTGAAGTGCTTATCCTTGCCAG- 176 Query 381 CAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGC 440 ||||| |||||| ||||||||| | ||||||||||||||||||| || ||||| Sbjct 177 CAACGGTAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCACCCC--ACG--AAAGG- 231 Query 441 ACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGC--CA 498 |||||||| | ||||| || |||| |||||| |||||||||||| || Sbjct 232 ------GCTCCGACCGCTTGTAAGCGTATGGGTTCAGGATCTATTTCACTCCGTTATTCA 285 Query 499 GGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTT 558 || | ||||||||||||||||||||||||| || | ||||||||| | ||||| |||| Sbjct 286 CGGTT-CTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCTCTCAGGAGGATTT 344 >seq25806 Length=234 Score = 145 bits (160), Expect = 3e-32 Identities = 145/182 (80%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 52 CGGCATTCGGAGTTTGGT-TGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGC 110 ||| ||| ||||||| | || ||| |||||||| || ||||||||| | | |||||| Sbjct 188 CGGTATTGTGAGTTTGATATGGTTT-GGTAAGCTGGTAAGCCCCCTAGCCAAGTCAGTGC 130 Query 111 TCTACCTCCGGGAAGAAACACG-CGA-CGCTGCACCTAAATGCATTTCGGGGAGAACCAG 168 | |||| ||| | | || ||| ||||||||||||||||||||||| ||||||||| Sbjct 129 TATACCCCCGTT--GGTATTCGTCGAACGCTGCACCTAAATGCATTTCGGAGAGAACCAG 72 Query 169 CTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAA 228 || ||||| | |||||||||||||||||||||| ||||| ||||||| |||||||| Sbjct 71 CTCTCACGGAATTTGATTGGCCTTTCACCCCTAACCACAAATCATCCCAGACGTTTTCAA 12 Query 229 CC 230 || Sbjct 11 CC 10 >seq22546 Length=250 Score = 123 bits (136), Expect = 9e-26 Identities = 85/95 (89%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||||||| | |||| || ||||||||||||| ||||||||||||| |||||||||| Sbjct 156 TCGACTACGAACCTTA-TCGCCCGCAGTCTCACTCCCGCGCTCTCACTCACCGGCATTCG 214 Query 61 GAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCC 95 |||||||| |||||||||||||||| ||||||||| Sbjct 215 GAGTTTGGCTGATTTCGGTAAGCTTTTGGGCCCCC 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1816937248512