Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= AAMG01001228.1 Length=576 Score E Sequences producing significant alignments: (Bits) Value seq25805 145 3e-32 >seq25805 Length=234 Score = 145 bits (160), Expect = 3e-32 Identities = 169/227 (74%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 346 GCAACCATATCGGCCACCTCACCCTCAACCGCCCCGCCGGCCTGAACGCCATTACCCTGG 405 ||||||| ||||||||||||| || |||||||||||||| || |||||| | | |||| Sbjct 1 GCAACCACGTCGGCCACCTCACGCTGAACCGCCCCGCCGGGCTCAACGCCGTCAATCTGG 60 Query 406 ACATGGTCCGCAGCCTGAGCCACCACCTGCAGGCCTGGGCCGACGATCCCACGGTGTATG 465 | ||||| ||| || | || ||| |||||||||| ||| || || | | | Sbjct 61 AGATGGTGCGCCTGCTCGATGAGCAGTTGCGCGCCTGGGCCGCCGACCCGTCGATTCACG 120 Query 466 CCGTGGTCCTGCGCGGCGCCGGGGAAAAAGCCTTCTGCGCGGGCGGCGATATCCGTTCCT 525 |||| || ||||||| | ||| || || || |||||||| ||||| || ||||| || Sbjct 121 CCGTCGTGCTGCGCGCCAACGGCGAGAAGGCGTTCTGCGCCGGCGGTGACATCCGCTCGC 180 Query 526 TGCATGACAGTTTCAAGAGCGGCGACACCCTGCACGAAGACTTCTTT 572 || | ||||| |||||| ||||||| ||| ||||| |||| | ||| Sbjct 181 TGTACGACAGCTTCAAGCGCGGCGATACCGAGCACG-AGACCTTTTT 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1740165252096