Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15]
36,463 sequences; 36,098,533 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq14514 205 2e-50
seq34400 87.8 4e-15
>seq14514
Length=344
Score = 205 bits (226), Expect = 2e-50
Identities = 267/355 (75%), Gaps = 17/355 (5%)
Strand=Plus/Plus
Query 13 AGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCC 72
||||||| ||| |||||| ||||| | |||||||| |||||| | || ||||||
Sbjct 1 AGGTCAT-CCGAAGACTTTT-CAACGTCAACCGGTTCGGACCTCCACTATGT-GTTACCA 57
Query 73 AACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTAT--TTCCCAGCGA 130
| ||| || ||||||||| || |||||| | |||||| || ||||| || | ||
Sbjct 58 CAGCTT-CATCCTGCCCATGGG-TAGATCACACGGTTT-CGCGTCTACCATTACT---GA 111
Query 131 CTAGA-CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC---CCTATTCGGTTAAGCTT 186
||| | ||||||| | ||||||||||| ||||||| ||| ||| | | | | |
Sbjct 112 CTATAGCGCCCTATTCAGACTCGCTTT-CGCTACGGATCCACACCTGAAGTGCTTATCCT 170
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246
||||| | ||| ||| | | |||||| ||||||| |||| ||||||| || ||
Sbjct 171 TGCCAGCAACGGTAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCACCCCACGAAA- 229
Query 247 GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306
||||||| || ||||||| || || || |||||||||||||||||||| | | | |||
Sbjct 230 GGGCTCCGACCGCTTGTAAGCGTATGGGTTCAGGATCTATTTCACTCCGTTATTCACGGT 289
Query 307 TCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361
||||||| |||||||||||||||||| |||||||||||||| |||| || ||||
Sbjct 290 TCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCTCTCAGGAGGATTT 344
>seq34400
Length=219
Score = 87.8 bits (96), Expect = 4e-15
Identities = 54/58 (93%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 363 GCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
||||||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||
Sbjct 1 GCCTTGGAGGATGGTCCCCCCATGTTCAGACAACGTTTCACGTGCGCCGTCCTACTCG 58
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1241147275392
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |