Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15]
36,463 sequences; 36,098,533 total letters
Query= AAMG01001634.1
Length=217
Score E
Sequences producing significant alignments: (Bits) Value
seq968 150 2e-34
seq9686 145 9e-33
seq12757 116 4e-24
seq35803 89.7 6e-16
seq1771 73.4 5e-11
>seq968
Length=8442
Score = 150 bits (166), Expect = 2e-34
Identities = 150/192 (78%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||
Sbjct 6528 CTAGAAACCAACAAAATAGAACCGCGCGTCCTATTTCATTATTCCATGCTAATGTATTCG 6587
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125
|| || |||||| | || |||||||||||| |||| |||||||||||| |||| | ||
Sbjct 6588 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGTTTCCCCGCCA 6647
Query 126 C-ACCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183
| ||| |||| ||||| || ||| || | ||| | || |||||| |||
Sbjct 6648 CGCCCAGTGAAGGGCATGGGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTACACGCG 6707
Query 184 GTGAGGCGGACC 195
||||||||||||
Sbjct 6708 GTGAGGCGGACC 6719
>seq9686
Length=430
Score = 145 bits (160), Expect = 9e-33
Identities = 149/192 (78%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||
Sbjct 238 CTAGAAACCAACAAAATAGAACCGCGCGTCCTATTTCATTATTCCATGCTAATGTATTCG 179
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125
|| || |||||| | || |||||||||||| |||| |||||||||||| |||| | ||
Sbjct 178 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGTTTCCCCGCCA 119
Query 126 C-ACCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183
| ||| |||| ||||| || ||| || | ||| | || |||||| |||
Sbjct 118 CGCCCAGTGAAGGGCATGGGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTACACGCG 59
Query 184 GTGAGGCGGACC 195
||||||| ||||
Sbjct 58 GTGAGGCAGACC 47
>seq12757
Length=372
Score = 116 bits (128), Expect = 4e-24
Identities = 98/119 (82%), Gaps = 1/119 (1%)
Strand=Plus/Minus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
|||||||||||||||| | ||| ||||||||| |||||| | ||||||||||||||
Sbjct 222 CTAGAAACCAACAAAAAAAAACCGCGCGTCCTATTTCATTATTTCCTGCTAATGTATTCG 163
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGC 124
|| ||||||||| | | |||||||||||| | || |||||||||||| |||| ||||
Sbjct 162 AGCATAAGCCTGCCTGGGGCACTCTAATTTTTTTAAAGTAAAAGTCCTGTTTCC-CCGC 105
>seq35803
Length=206
Score = 89.7 bits (98), Expect = 6e-16
Identities = 87/112 (78%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
||||||| |||||||| || |||| || || ||| ||||||||||||||||||||||
Sbjct 17 CTAGAAAACAACAAAAAAGAAACGCGCGCCCCATTTCCTTATTCCATGCTAATGTATTCG 76
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTT 117
|| || ||| || || ||||| |||||| | | | |||||||||| ||
Sbjct 77 CGCATAGGCCCGCCCGGAGCACTCCAATTTTTTTCAAGAAAAAGTCCTGTTT 128
>seq1771
Length=3138
Score = 73.4 bits (80), Expect = 5e-11
Identities = 85/115 (74%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
|||||||| || |||||| ||| |||| |||||||| || ||||| ||||
Sbjct 334 CTAGAAACTAATAAAATAAAACTATGCGTTTTATTTTATTATTCTATACTAATATATTTA 393
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCT 120
|| ||||||||| | | ||||||||| || | || ||||||||||| |||||
Sbjct 394 AGCATAAGCCTGCCTAAAGCACTCTAATATTTTTAAAGTAAAAGTCCTATTTCCT 448
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 594989754342
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |