Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq968 150 2e-34 seq9686 145 9e-33 seq12757 116 4e-24 seq35803 89.7 6e-16 seq1771 73.4 5e-11 >seq968 Length=8442 Score = 150 bits (166), Expect = 2e-34 Identities = 150/192 (78%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||| Sbjct 6528 CTAGAAACCAACAAAATAGAACCGCGCGTCCTATTTCATTATTCCATGCTAATGTATTCG 6587 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||| | || |||||||||||| |||| |||||||||||| |||| | || Sbjct 6588 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGTTTCCCCGCCA 6647 Query 126 C-ACCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 | ||| |||| ||||| || ||| || | ||| | || |||||| ||| Sbjct 6648 CGCCCAGTGAAGGGCATGGGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTACACGCG 6707 Query 184 GTGAGGCGGACC 195 |||||||||||| Sbjct 6708 GTGAGGCGGACC 6719 >seq9686 Length=430 Score = 145 bits (160), Expect = 9e-33 Identities = 149/192 (78%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||| Sbjct 238 CTAGAAACCAACAAAATAGAACCGCGCGTCCTATTTCATTATTCCATGCTAATGTATTCG 179 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||| | || |||||||||||| |||| |||||||||||| |||| | || Sbjct 178 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGTTTCCCCGCCA 119 Query 126 C-ACCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 | ||| |||| ||||| || ||| || | ||| | || |||||| ||| Sbjct 118 CGCCCAGTGAAGGGCATGGGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTACACGCG 59 Query 184 GTGAGGCGGACC 195 ||||||| |||| Sbjct 58 GTGAGGCAGACC 47 >seq12757 Length=372 Score = 116 bits (128), Expect = 4e-24 Identities = 98/119 (82%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||||||||||| | ||| ||||||||| |||||| | |||||||||||||| Sbjct 222 CTAGAAACCAACAAAAAAAAACCGCGCGTCCTATTTCATTATTTCCTGCTAATGTATTCG 163 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGC 124 || ||||||||| | | |||||||||||| | || |||||||||||| |||| |||| Sbjct 162 AGCATAAGCCTGCCTGGGGCACTCTAATTTTTTTAAAGTAAAAGTCCTGTTTCC-CCGC 105 >seq35803 Length=206 Score = 89.7 bits (98), Expect = 6e-16 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||| |||||||| || |||| || || ||| |||||||||||||||||||||| Sbjct 17 CTAGAAAACAACAAAAAAGAAACGCGCGCCCCATTTCCTTATTCCATGCTAATGTATTCG 76 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTT 117 || || ||| || || ||||| |||||| | | | |||||||||| || Sbjct 77 CGCATAGGCCCGCCCGGAGCACTCCAATTTTTTTCAAGAAAAAGTCCTGTTT 128 >seq1771 Length=3138 Score = 73.4 bits (80), Expect = 5e-11 Identities = 85/115 (74%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || |||||| ||| |||| |||||||| || ||||| |||| Sbjct 334 CTAGAAACTAATAAAATAAAACTATGCGTTTTATTTTATTATTCTATACTAATATATTTA 393 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCT 120 || ||||||||| | | ||||||||| || | || ||||||||||| ||||| Sbjct 394 AGCATAAGCCTGCCTAAAGCACTCTAATATTTTTAAAGTAAAAGTCCTATTTCCT 448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594989754342