Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq16046 91.5 3e-16 >seq16046 Length=322 Score = 91.5 bits (100), Expect = 3e-16 Identities = 206/300 (69%), Gaps = 10/300 (3%) Strand=Plus/Minus Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTG 63 |||||| | || ||||||||||||| ||||||||| | || || ||| | | | Sbjct 298 CTACGCATCTCTGCCTCGCCTTAGGGGCCGACTCACTCTACGCCGATGAACGTTGCGTAG 239 Query 64 GAACCCTTG-GATAATCGGCGGACGGGATTCCCACCCG-TCACACGCTACTCATGCCTGC 121 || ||||| | | | ||||| ||| || ||||| | |||||||||||| | || Sbjct 238 AAAACCTTGCGCTTA-CGGCGAGGGGGCTTTTCACCCCCTTTAACGCTACTCATGTCAGC 180 Query 122 ATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGG-CAGCTTCACCA-CTGACACG 178 |||| |||| | || | ||||| || | || | || |||||| || ||| Sbjct 179 ATTCGCACTTCTGAT-ACCTCCAGCATGCGTTCTCAGACTCACCTTCACAGGCTTACAGA 121 Query 179 ACGCTCCCCTACCCAACCACACAGGTTG---CCACAGCTTCGGCGGATAACTTAAGCCCC 235 ||||||| ||||| | || | |||| || |||||||| | || || |||||| Sbjct 120 ACGCTCCTCTACCGCTCAACTTACGTTGAACCCGTAGCTTCGGTGCATGGTTTGAGCCCC 61 Query 236 GCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATG 295 | ||||| || |||| | ||| ||| ||||||||||||||| ||||| ||||||| Sbjct 60 GTTACATCTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAGGATG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177170611712