Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15]
36,463 sequences; 36,098,533 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq16046 91.5 3e-16
>seq16046
Length=322
Score = 91.5 bits (100), Expect = 3e-16
Identities = 206/300 (69%), Gaps = 10/300 (3%)
Strand=Plus/Minus
Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTG 63
|||||| | || ||||||||||||| ||||||||| | || || ||| | | |
Sbjct 298 CTACGCATCTCTGCCTCGCCTTAGGGGCCGACTCACTCTACGCCGATGAACGTTGCGTAG 239
Query 64 GAACCCTTG-GATAATCGGCGGACGGGATTCCCACCCG-TCACACGCTACTCATGCCTGC 121
|| ||||| | | | ||||| ||| || ||||| | |||||||||||| | ||
Sbjct 238 AAAACCTTGCGCTTA-CGGCGAGGGGGCTTTTCACCCCCTTTAACGCTACTCATGTCAGC 180
Query 122 ATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGG-CAGCTTCACCA-CTGACACG 178
|||| |||| | || | ||||| || | || | || |||||| || |||
Sbjct 179 ATTCGCACTTCTGAT-ACCTCCAGCATGCGTTCTCAGACTCACCTTCACAGGCTTACAGA 121
Query 179 ACGCTCCCCTACCCAACCACACAGGTTG---CCACAGCTTCGGCGGATAACTTAAGCCCC 235
||||||| ||||| | || | |||| || |||||||| | || || ||||||
Sbjct 120 ACGCTCCTCTACCGCTCAACTTACGTTGAACCCGTAGCTTCGGTGCATGGTTTGAGCCCC 61
Query 236 GCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATG 295
| ||||| || |||| | ||| ||| ||||||||||||||| ||||| |||||||
Sbjct 60 GTTACATCTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAGGATG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177170611712
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |