Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq968 300 3e-79 seq17347 123 5e-26 seq13773 95.1 2e-17 seq36183 86.0 1e-14 seq23946 82.4 1e-13 >seq968 Length=8442 Score = 300 bits (332), Expect = 3e-79 Identities = 190/203 (94%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 5530 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTA 5471 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 | || |||||||||||||| | ||||||||||||||||||| |||||||||||||||||| Sbjct 5470 C-TC-CCTTGGCCGGAAGGCCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAG 5413 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||| Sbjct 5412 CATTGCAATTATTGCTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGT 5353 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||||||| Sbjct 5352 TGATTACGTCCCTGCCCTTTGTA 5330 Score = 150 bits (166), Expect = 3e-34 Identities = 97/106 (92%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | |||||||| | |||||||||||||| Sbjct 6050 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCCGGCTTCTTAG 5991 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5990 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 5945 >seq17347 Length=306 Score = 123 bits (136), Expect = 5e-26 Identities = 91/106 (86%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||| ||||||||||||||||| || |||||||| | |||||| ||| ||| Sbjct 163 GAACGAGACCATAACCTGCTAAATAGCCCGGAATGCTTTGGCAGTACGCCGGATTCATAG 222 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 ||||||||||||| ||| ||||||||||||||||| |||||| ||| Sbjct 223 AGGGACTATCGGCCCAATCCGATGGAAGTTTGAGGGAATAACCGGT 268 >seq13773 Length=355 Score = 95.1 bits (104), Expect = 2e-17 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 39 TAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGACTATCGGCTCAAGC 98 ||||||||| | |||||||| | ||||||||||||| |||||| |||||| | || Sbjct 355 TAAATAGCCCGTGTTGCTTTGGCAGTAGGCCGGCTTCTTAGTGGGACTGTCGGCTGACGC 296 Query 99 CGATGGAAGTTTGAGGCAATAACAGGT 125 |||||||||||||||||||| |||||| Sbjct 295 CGATGGAAGTTTGAGGCAATTACAGGT 269 >seq36183 Length=202 Score = 86.0 bits (94), Expect = 1e-14 Identities = 65/74 (88%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 |||||||||||||||| |||| ||||||||||||||| |||||||| |||||| || || Sbjct 103 CTGTGATGCCCTTAGACGTTCCGGGCCGCACGCGCGCCACACTGACGGAGCCAGCGCGTA 162 Query 186 CATCACCTTGGCCG 199 | || ||||||||| Sbjct 163 C-TC-CCTTGGCCG 174 >seq23946 Length=242 Score = 82.4 bits (90), Expect = 1e-13 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || |||| ||||| |||||||||||||| | |||||||| | |||||||||||||| Sbjct 75 GAACGAGCCCTTACCCTGCTAAATAGCCTGTATTGCTTTGGCAGTACGCCGGCTTCTTAG 16 Query 80 AGGGACTATCGGCTC 94 |||||||||||||| Sbjct 15 CGGGACTATCGGCTC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946854622464