Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15]
36,463 sequences; 36,098,533 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq968 300 3e-79
seq17347 123 5e-26
seq13773 95.1 2e-17
seq36183 86.0 1e-14
seq23946 82.4 1e-13
>seq968
Length=8442
Score = 300 bits (332), Expect = 3e-79
Identities = 190/203 (94%), Gaps = 2/203 (1%)
Strand=Plus/Minus
Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 5530 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTA 5471
Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245
| || |||||||||||||| | ||||||||||||||||||| ||||||||||||||||||
Sbjct 5470 C-TC-CCTTGGCCGGAAGGCCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAG 5413
Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305
|||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||
Sbjct 5412 CATTGCAATTATTGCTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGT 5353
Query 306 TGATTACGTCCCTGCCCTTTGTA 328
|||||||||||||||||||||||
Sbjct 5352 TGATTACGTCCCTGCCCTTTGTA 5330
Score = 150 bits (166), Expect = 3e-34
Identities = 97/106 (92%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||||||||| | |||||||| | ||||||||||||||
Sbjct 6050 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCCGGCTTCTTAG 5991
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5990 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 5945
>seq17347
Length=306
Score = 123 bits (136), Expect = 5e-26
Identities = 91/106 (86%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||| ||||||||||||||||| || |||||||| | |||||| ||| |||
Sbjct 163 GAACGAGACCATAACCTGCTAAATAGCCCGGAATGCTTTGGCAGTACGCCGGATTCATAG 222
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125
||||||||||||| ||| ||||||||||||||||| |||||| |||
Sbjct 223 AGGGACTATCGGCCCAATCCGATGGAAGTTTGAGGGAATAACCGGT 268
>seq13773
Length=355
Score = 95.1 bits (104), Expect = 2e-17
Identities = 73/87 (84%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 39 TAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGACTATCGGCTCAAGC 98
||||||||| | |||||||| | ||||||||||||| |||||| |||||| | ||
Sbjct 355 TAAATAGCCCGTGTTGCTTTGGCAGTAGGCCGGCTTCTTAGTGGGACTGTCGGCTGACGC 296
Query 99 CGATGGAAGTTTGAGGCAATAACAGGT 125
|||||||||||||||||||| ||||||
Sbjct 295 CGATGGAAGTTTGAGGCAATTACAGGT 269
>seq36183
Length=202
Score = 86.0 bits (94), Expect = 1e-14
Identities = 65/74 (88%), Gaps = 2/74 (3%)
Strand=Plus/Plus
Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185
|||||||||||||||| |||| ||||||||||||||| |||||||| |||||| || ||
Sbjct 103 CTGTGATGCCCTTAGACGTTCCGGGCCGCACGCGCGCCACACTGACGGAGCCAGCGCGTA 162
Query 186 CATCACCTTGGCCG 199
| || |||||||||
Sbjct 163 C-TC-CCTTGGCCG 174
>seq23946
Length=242
Score = 82.4 bits (90), Expect = 1e-13
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| |||| ||||| |||||||||||||| | |||||||| | ||||||||||||||
Sbjct 75 GAACGAGCCCTTACCCTGCTAAATAGCCTGTATTGCTTTGGCAGTACGCCGGCTTCTTAG 16
Query 80 AGGGACTATCGGCTC 94
||||||||||||||
Sbjct 15 CGGGACTATCGGCTC 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 946854622464
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |