Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15]
36,463 sequences; 36,098,533 total letters
Query= AAMG01002193.1
Length=560
Score E
Sequences producing significant alignments: (Bits) Value
seq25806 118 4e-24
seq14514 95.1 4e-17
>seq25806
Length=234
Score = 118 bits (130), Expect = 4e-24
Identities = 161/221 (73%), Gaps = 3/221 (1%)
Strand=Plus/Plus
Query 111 GTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATA 170
|||||||| | ||||||| ||||| |||||||||||||| || |||| | | | |
Sbjct 11 GTTGAAAACGTCTGGGATGATTTGTGGTTAGGGGTGAAAGGCCAATCAAATTCCGTGAGA 70
Query 171 GCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC-CTCAAGTATCACCATCGGGGGTAGAG 229
||||||||||||||||| |||||||| || || | | |||| |||||||| ||
Sbjct 71 GCTGGTTCTCTCCGAAATGCATTTAGGTGCAGCGTTCGACGAATACCAACGGGGGTATAG 130
Query 230 CACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCA 289
||||| ||||||||||| | | | ||||||||||||| ||||||| ||| |
Sbjct 131 CACTGACTTGGCTAGGGGG-CTTACCAGCTTACCAAACCATATCAAACTCACAATACCGT 189
Query 290 TCAGTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCC 330
| ||| || || | ||||| ||| |||||||||||
Sbjct 190 TGAGTACTATCG-AGCAGTGACACAGTGGATGCTAAGGTCC 229
>seq14514
Length=344
Score = 95.1 bits (104), Expect = 4e-17
Identities = 93/119 (78%), Gaps = 2/119 (2%)
Strand=Plus/Minus
Query 2 CGAGTCCGAACAGGGCG--ACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59
|||||| ||| |||||| | |||| | |||||| ||||||| ||||||||||||
Sbjct 134 CGAGTCTGAATAGGGCGCTATAGTCAGTAATGGTAGACGCGAAACCGTGTGATCTACCCA 75
Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAA 118
||| |||||||||| || |||||||| |||||||||||||| | | ||||||||
Sbjct 74 TGGGCAGGATGAAGCTGTGGTAACACATAGTGGAGGTCCGAACCGGTTGACGTTGAAAA 16
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1688983921152
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |