Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq34400 118 2e-24 >seq34400 Length=219 Score = 118 bits (130), Expect = 2e-24 Identities = 111/139 (80%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 181 ATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAAT 240 ||||||||| | |||||||||||||||||||||||||| |||||||||||||||| Sbjct 219 ATCTAAGTACCCTGAGGAAAAGAAATCAACCGAGATTCCCTTAGTAGTGGCGAGCGAACG 160 Query 241 GGGATGAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCAT 300 ||||| |||| ||| | | |||| | |||| ||| ||||||||| | ||||| Sbjct 159 GGGATTAGCCCTTAAG-CTTCTTTGA--TCTTAGTAGAAGGCTCTGGAAAGTGCCGCCAT 103 Query 301 AGCGGGTGATAGCCCCGTA 319 || |||||||||||||||| Sbjct 102 AGTGGGTGATAGCCCCGTA 84 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918065123808