Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq6198 241 2e-61 seq968 241 2e-61 seq21297 212 1e-52 seq2845 154 2e-35 seq26813 140 5e-31 seq24149 123 4e-26 seq482 111 3e-22 seq27675 105 1e-20 seq939 87.8 3e-15 >seq6198 Length=546 Score = 241 bits (266), Expect = 2e-61 Identities = 225/278 (81%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||||||||||||| |||| |||||| Sbjct 377 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 320 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 319 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 260 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| |||||| | | || |||| | ||| ||| | ||||||||| |||| | Sbjct 259 GAACGCGGTGATAC-CGCCCGCACGT-ATAGATGGACAAGAATAGGCTCCGGCTTAGCGT 202 Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240 |||||||||| | ||| | | ||||||||| | | | | | ||| |||| | Sbjct 201 CTTAGCAGGCGATCTCTCCGCGGCGC-AGGAAGCGCGTCGTGGT-ATTTCGCGTATTGTA 144 Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||||| || | || ||| |||||||||||||||||| Sbjct 143 ATTTCAACACGAGCGGGGTCAAATCCTTTGCAGACGAC 106 >seq968 Length=8442 Score = 241 bits (266), Expect = 2e-61 Identities = 225/278 (81%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||||||||||||| |||| |||||| Sbjct 1300 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 1243 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1242 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 1183 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| |||||| | | || |||| | ||| ||| | ||||||||| |||| | Sbjct 1182 GAACGCGGTGATAC-CGCCCGCACGT-ATAGATGGACAAGAATAGGCTCCGGCTTAGCGT 1125 Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240 |||||||||| | ||| | | ||||||||| | | | | | ||| |||| | Sbjct 1124 CTTAGCAGGCGATCTCTCCGCGGCGC-AGGAAGCGCGTCGTGGT-ATTTCGCGTATTGTA 1067 Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||||| || | || ||| |||||||||||||||||| Sbjct 1066 ATTTCAACACGAGCGGGGTCAAATCCTTTGCAGACGAC 1029 >seq21297 Length=259 Score = 212 bits (234), Expect = 1e-52 Identities = 164/190 (86%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| || |||||||||||||||||| |||| |||||| Sbjct 18 GTACGAGAGGAACCGCTGA-TTCAGA-TACTTGGTTTTTGCGGCTGTCCGACCGGGCAGT 75 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 76 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 135 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| |||||| | | || |||| | ||| ||| | ||||||||| |||| | Sbjct 136 GAACGCGGTGATAC-CGCCCGCACGT-ATAGATGGACAAGAATAGGCTCCGGCTTAGCGT 193 Query 181 CTTAGCAGGC 190 |||||||||| Sbjct 194 CTTAGCAGGC 203 >seq2845 Length=1040 Score = 154 bits (170), Expect = 2e-35 Identities = 135/163 (83%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65 |||| |||| | |||| | ||||||| |||||||||||| ||| || ||||| |||| Sbjct 862 AGAGAAACCACT-AATTTA-AATAATTAGTTTTTGCGGCTATCTAACTAGGCAATGCCAT 919 Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125 |||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||| Sbjct 920 GAAGCTACCATCTGCTAGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCTAGAACG 979 Query 126 GGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCT 168 |||||| | | || |||| | ||| ||| | ||||||||| Sbjct 980 CGGTGATAC-CGCCCGCACGT-ATAGATGGACAAGAATAGGCT 1020 >seq26813 Length=230 Score = 140 bits (154), Expect = 5e-31 Identities = 138/173 (80%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||| |||||||| || | |||| |||| || |||||||||||| |||| |||||| Sbjct 228 GTACGAAAGGAACCGTTGA-TGCAGA-TAATGTGTGTTTGCGGCTGTCCGACCGGGCAGT 171 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 |||| ||||||| ||||||||| | |||||||||||||||| |||||| | |||||||| Sbjct 170 GCCGTGAAGCTAAAATCTGCTGGGTAATGGCTGAACGCCTCTGAGTCAGTAGCCATGCCA 111 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGC 173 || || ||||| | | || | || | ||| ||| | ||||||||| |||| Sbjct 110 GAGCGCGGTGA-TAGCGCCCGAACGT-ATAGATGGACAAGAATAGGCTGCGGC 60 >seq24149 Length=241 Score = 123 bits (136), Expect = 4e-26 Identities = 128/164 (78%), Gaps = 3/164 (2%) Strand=Plus/Minus Query 27 ATAATTGGTTTT-TGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGAT 85 ||| || ||||| ||| | |||| || ||||||| |||||||| | ||||||||||| Sbjct 205 ATATTTTGTTTTCTGCTGTTGTCCTCCCTTGCAGTGCTGCGAAGCTTCTATCTGCTGGAT 146 Query 86 TATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCCTGCACA 145 ||||||||||| |||||||||||||||||||||||| || |||||| | |||| |||| Sbjct 145 AATGGCTGAACGTCTCTAAGTCAGAATCCATGCCAGATCGCGGTGATAC-CTCCCGCACG 87 Query 146 TCGTAGTCGGATACGAATAGGCTTCGGCCCCGAACCTTAGCAGG 189 | ||| | | | |||||| || | || || ||||||||| Sbjct 86 T-TTAGATGTACAAGAATAGTCTCCTGCTTCGCTTCTTAGCAGG 44 >seq482 Length=16047 Score = 111 bits (122), Expect = 3e-22 Identities = 182/256 (71%), Gaps = 10/256 (4%) Strand=Plus/Minus Query 26 AATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGAT 85 ||||||| |||||| |||| | | || ||| ||||| || ||||||| || |||| ||| Sbjct 361 AATAATTAGTTTTTATGGCTATTTAACTAGGTAGTGCTGCAAAGCTACTATTTGCTAGAT 302 Query 86 TATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCCTGCACA 145 || ||| ||||||||||||| ||||||||||| |||||| ||| || || || ||| | Sbjct 301 AATAGCTAAACGCCTCTAAGTTAGAATCCATGCTAGAACGCGGTAATACT-GCCCGCATA 243 Query 146 TCGTAGTCGGATACGAATAGGCTTCGGCCCCGAACCTTAGCAGGC--CGGCAACG-GGCG 202 | || |||| ||||||||| || | ||||| | || | || |||| Sbjct 242 T-ATAAATAGATAAGAATAGGCTCTAGCTTAGCGTCTTAGTAAGCAATCTCTCCGCGGCG 184 Query 203 TCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCAATTTCACCATGCGCAGGGATAA 262 | ||||||||| | | | | | ||| |||| ||||| | || || ||| || Sbjct 183 T----AGGAAGCGCGTCGTGGT-ATTTTGCGTATTGTAATTTTAACACAAGCGGGGTCAA 129 Query 263 ATCCTTTGCAGACGAC 278 |||||||||||||||| Sbjct 128 ATCCTTTGCAGACGAC 113 >seq27675 Length=230 Score = 105 bits (116), Expect = 1e-20 Identities = 79/90 (88%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||| ||||| || ||| | ||||||||||||||||||||| |||| |||||| Sbjct 143 GTACGAGAGGCACCGCTGA-TTCCGC-TAATTGGTTTTTGCGGCTGTCAGACCGGGCAGT 200 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||||| ||||||| ||||||||| |||| Sbjct 201 GCCGCGAGGCTACCACCTGCTGGATAATGG 230 >seq939 Length=8709 Score = 87.8 bits (96), Expect = 3e-15 Identities = 133/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65 |||| |||||| |||| | ||||||| |||||| ||| ||| || ||| | ||| Sbjct 3370 AGAGAAACCGCT-AATTTA-AATAATTAGTTTTTATAGCTATCTAACTAGGTAATGCTAT 3313 Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125 ||||||| || | || || || ||| ||||||||||||| ||||| ||||| |||||| Sbjct 3312 AAAGCTACTATTTACTAAATAATAGCTAAACGCCTCTAAGTTAGAATTCATGCTAGAACG 3253 Query 126 GGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAACCTTAG 185 || || || | |||| || || |||| |||||||||| ||| | | ||||| Sbjct 3252 TAGTAATACT-ACTTGCATAT-ATAAATAGATAAGAATAGGCTTTGGCTTAGTATCTTAG 3195 Query 186 CAGG 189 ||| Sbjct 3194 TAGG 3191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818910629632