Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15]
36,463 sequences; 36,098,533 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq6198 241 2e-61
seq968 241 2e-61
seq21297 212 1e-52
seq2845 154 2e-35
seq26813 140 5e-31
seq24149 123 4e-26
seq482 111 3e-22
seq27675 105 1e-20
seq939 87.8 3e-15
>seq6198
Length=546
Score = 241 bits (266), Expect = 2e-61
Identities = 225/278 (81%), Gaps = 6/278 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || |||||| ||||||||||||||||||||| |||| ||||||
Sbjct 377 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 320
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 319 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 260
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||| |||||| | | || |||| | ||| ||| | ||||||||| |||| |
Sbjct 259 GAACGCGGTGATAC-CGCCCGCACGT-ATAGATGGACAAGAATAGGCTCCGGCTTAGCGT 202
Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240
|||||||||| | ||| | | ||||||||| | | | | | ||| |||| |
Sbjct 201 CTTAGCAGGCGATCTCTCCGCGGCGC-AGGAAGCGCGTCGTGGT-ATTTCGCGTATTGTA 144
Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
|||||| || | || ||| ||||||||||||||||||
Sbjct 143 ATTTCAACACGAGCGGGGTCAAATCCTTTGCAGACGAC 106
>seq968
Length=8442
Score = 241 bits (266), Expect = 2e-61
Identities = 225/278 (81%), Gaps = 6/278 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || |||||| ||||||||||||||||||||| |||| ||||||
Sbjct 1300 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 1243
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1242 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 1183
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||| |||||| | | || |||| | ||| ||| | ||||||||| |||| |
Sbjct 1182 GAACGCGGTGATAC-CGCCCGCACGT-ATAGATGGACAAGAATAGGCTCCGGCTTAGCGT 1125
Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240
|||||||||| | ||| | | ||||||||| | | | | | ||| |||| |
Sbjct 1124 CTTAGCAGGCGATCTCTCCGCGGCGC-AGGAAGCGCGTCGTGGT-ATTTCGCGTATTGTA 1067
Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
|||||| || | || ||| ||||||||||||||||||
Sbjct 1066 ATTTCAACACGAGCGGGGTCAAATCCTTTGCAGACGAC 1029
>seq21297
Length=259
Score = 212 bits (234), Expect = 1e-52
Identities = 164/190 (86%), Gaps = 4/190 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || |||||| || |||||||||||||||||| |||| ||||||
Sbjct 18 GTACGAGAGGAACCGCTGA-TTCAGA-TACTTGGTTTTTGCGGCTGTCCGACCGGGCAGT 75
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 76 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 135
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||| |||||| | | || |||| | ||| ||| | ||||||||| |||| |
Sbjct 136 GAACGCGGTGATAC-CGCCCGCACGT-ATAGATGGACAAGAATAGGCTCCGGCTTAGCGT 193
Query 181 CTTAGCAGGC 190
||||||||||
Sbjct 194 CTTAGCAGGC 203
>seq2845
Length=1040
Score = 154 bits (170), Expect = 2e-35
Identities = 135/163 (83%), Gaps = 4/163 (2%)
Strand=Plus/Plus
Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65
|||| |||| | |||| | ||||||| |||||||||||| ||| || ||||| ||||
Sbjct 862 AGAGAAACCACT-AATTTA-AATAATTAGTTTTTGCGGCTATCTAACTAGGCAATGCCAT 919
Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125
|||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 920 GAAGCTACCATCTGCTAGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCTAGAACG 979
Query 126 GGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCT 168
|||||| | | || |||| | ||| ||| | |||||||||
Sbjct 980 CGGTGATAC-CGCCCGCACGT-ATAGATGGACAAGAATAGGCT 1020
>seq26813
Length=230
Score = 140 bits (154), Expect = 5e-31
Identities = 138/173 (80%), Gaps = 4/173 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||| |||||||| || | |||| |||| || |||||||||||| |||| ||||||
Sbjct 228 GTACGAAAGGAACCGTTGA-TGCAGA-TAATGTGTGTTTGCGGCTGTCCGACCGGGCAGT 171
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
|||| ||||||| ||||||||| | |||||||||||||||| |||||| | ||||||||
Sbjct 170 GCCGTGAAGCTAAAATCTGCTGGGTAATGGCTGAACGCCTCTGAGTCAGTAGCCATGCCA 111
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGC 173
|| || ||||| | | || | || | ||| ||| | ||||||||| ||||
Sbjct 110 GAGCGCGGTGA-TAGCGCCCGAACGT-ATAGATGGACAAGAATAGGCTGCGGC 60
>seq24149
Length=241
Score = 123 bits (136), Expect = 4e-26
Identities = 128/164 (78%), Gaps = 3/164 (2%)
Strand=Plus/Minus
Query 27 ATAATTGGTTTT-TGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGAT 85
||| || ||||| ||| | |||| || ||||||| |||||||| | |||||||||||
Sbjct 205 ATATTTTGTTTTCTGCTGTTGTCCTCCCTTGCAGTGCTGCGAAGCTTCTATCTGCTGGAT 146
Query 86 TATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCCTGCACA 145
||||||||||| |||||||||||||||||||||||| || |||||| | |||| ||||
Sbjct 145 AATGGCTGAACGTCTCTAAGTCAGAATCCATGCCAGATCGCGGTGATAC-CTCCCGCACG 87
Query 146 TCGTAGTCGGATACGAATAGGCTTCGGCCCCGAACCTTAGCAGG 189
| ||| | | | |||||| || | || || |||||||||
Sbjct 86 T-TTAGATGTACAAGAATAGTCTCCTGCTTCGCTTCTTAGCAGG 44
>seq482
Length=16047
Score = 111 bits (122), Expect = 3e-22
Identities = 182/256 (71%), Gaps = 10/256 (4%)
Strand=Plus/Minus
Query 26 AATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGAT 85
||||||| |||||| |||| | | || ||| ||||| || ||||||| || |||| |||
Sbjct 361 AATAATTAGTTTTTATGGCTATTTAACTAGGTAGTGCTGCAAAGCTACTATTTGCTAGAT 302
Query 86 TATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCCTGCACA 145
|| ||| ||||||||||||| ||||||||||| |||||| ||| || || || ||| |
Sbjct 301 AATAGCTAAACGCCTCTAAGTTAGAATCCATGCTAGAACGCGGTAATACT-GCCCGCATA 243
Query 146 TCGTAGTCGGATACGAATAGGCTTCGGCCCCGAACCTTAGCAGGC--CGGCAACG-GGCG 202
| || |||| ||||||||| || | ||||| | || | || ||||
Sbjct 242 T-ATAAATAGATAAGAATAGGCTCTAGCTTAGCGTCTTAGTAAGCAATCTCTCCGCGGCG 184
Query 203 TCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCAATTTCACCATGCGCAGGGATAA 262
| ||||||||| | | | | | ||| |||| ||||| | || || ||| ||
Sbjct 183 T----AGGAAGCGCGTCGTGGT-ATTTTGCGTATTGTAATTTTAACACAAGCGGGGTCAA 129
Query 263 ATCCTTTGCAGACGAC 278
||||||||||||||||
Sbjct 128 ATCCTTTGCAGACGAC 113
>seq27675
Length=230
Score = 105 bits (116), Expect = 1e-20
Identities = 79/90 (88%), Gaps = 2/90 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||| ||||| || ||| | ||||||||||||||||||||| |||| ||||||
Sbjct 143 GTACGAGAGGCACCGCTGA-TTCCGC-TAATTGGTTTTTGCGGCTGTCAGACCGGGCAGT 200
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGG 90
||||||| ||||||| ||||||||| ||||
Sbjct 201 GCCGCGAGGCTACCACCTGCTGGATAATGG 230
>seq939
Length=8709
Score = 87.8 bits (96), Expect = 3e-15
Identities = 133/184 (72%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65
|||| |||||| |||| | ||||||| |||||| ||| ||| || ||| | |||
Sbjct 3370 AGAGAAACCGCT-AATTTA-AATAATTAGTTTTTATAGCTATCTAACTAGGTAATGCTAT 3313
Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125
||||||| || | || || || ||| ||||||||||||| ||||| ||||| ||||||
Sbjct 3312 AAAGCTACTATTTACTAAATAATAGCTAAACGCCTCTAAGTTAGAATTCATGCTAGAACG 3253
Query 126 GGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAACCTTAG 185
|| || || | |||| || || |||| |||||||||| ||| | | |||||
Sbjct 3252 TAGTAATACT-ACTTGCATAT-ATAAATAGATAAGAATAGGCTTTGGCTTAGTATCTTAG 3195
Query 186 CAGG 189
|||
Sbjct 3194 TAGG 3191
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 818910629632
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |