Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq752 217 1e-51 seq31 159 3e-34 seq31334 98.7 8e-16 >seq752 Length=11106 Score = 217 bits (240), Expect = 1e-51 Identities = 610/928 (66%), Gaps = 10/928 (1%) Strand=Plus/Plus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 || ||||||||||| || | |||||| ||||| | ||| ||||| || ||||| | Sbjct 4670 GGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTACTCAATG 4729 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 || || |||||||| || || ||| ||||| |||| |||| || || ||||| | Sbjct 4730 ATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTG 4789 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 ||||| ||||||||||||| ||| | || |||| || || |||||||| | |||| Sbjct 4790 TTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGACTCGAGGATG 4849 Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATG 66240 | || ||| || | || | || | | | ||| | || | || || || | Sbjct 4850 GAGTACCAGAGCTTCTGGGCACGAATAGT-CTTGCGGCCACGGCCCTCACGCTCATACTT 4908 Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCATACT--TCGGACAGACATGGACACTTGTGT 66298 ||||||||| || || | | | ||||| || | ||| | || |||| || Sbjct 4909 TTCGTAGAGAGCCTCAAAT--TCCTCGCCATAGCAATCAGCCAGGCCAGGGCACTCGTTG 4966 Query 66299 GGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATC 66358 |||||||| || | |||||| || | || ||| || || ||| || ||||| || ||| Sbjct 4967 GGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAGAGATCTGGGATC 5026 Query 66359 CAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG 66418 || || || |||||| ||||| || || | || || | ||||| || || ||||| Sbjct 5027 CACAGAGCAAGGAAGAGGTCGCGAGCACGATTTTCTTCCTTACCGTGGTTCTTTCGCAAA 5086 Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478 || || || || || | ||| || ||||| || || ||||||||||| || | || Sbjct 5087 TCAAGAAAGTCGAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGT 5146 Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGT 66538 || ||| || || ||||| ||||| | || ||||||||||| || | ||| || Sbjct 5147 CGCTTGTTACCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGA 5206 Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCG 66598 | || ||||| ||| | || ||||||||| | ||| || || || || || | Sbjct 5207 ATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGG 5266 Query 66599 TGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTG 66656 || || |||| || || ||||| ||| |||| ||||| ||||| || | | || Sbjct 5267 TGGACGTTCAAGCCGATTCCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTG 5326 Query 66657 TCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTT 66716 || | | ||||| |||||| ||| |||| ||| | ||| | || ||| || | Sbjct 5327 TC--GTAGATGCCATCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAGGAAGACAGCT 5384 Query 66717 GGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAG 66776 | | ||| || | || |||||| || |||| ||||| || ||| | || | Sbjct 5385 GACACTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGG 5444 Query 66777 ACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCAC 66836 ||||| | ||| ||||| | || ||||| || || || ||| |||| ||| Sbjct 5445 ACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATATTGTCTCCCCAAATACCGACCGCAA 5504 Query 66837 ATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGG 66896 ||||| | | || || || || ||||| | | | |||| | | | || | Sbjct 5505 CGCGCATAATCATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGAGTTTGAGAAGATATG 5564 Query 66897 AGCGTTCCAGGGTCTTGATACCAAAGTA 66924 | | ||||| ||||||| |||||||| Sbjct 5565 ATCTCTCCAGAGTCTTGAAGCCAAAGTA 5592 Score = 114 bits (126), Expect = 1e-20 Identities = 326/493 (66%), Gaps = 10/493 (2%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||||||||| | |||||| |||| || | | ||||||||||| || Sbjct 3763 ATCTACGGTGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGT 3822 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATA-ATTCGGCT 65195 |||||| || ||| || || ||||| || | | || |||| | | | || | Sbjct 3823 CTTGAGACCCAACTTCCAGCCAGCAAAGTGCATAGAGG-TGATCTTGCCCATAGTAGGAT 3881 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | || || | || | |||||| ||| ||||| | ||| ||||| || |||| Sbjct 3882 CCTTCATGTGAACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGATCGGCGGCCA 3941 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCA 65314 | | || | | |||| || |||||||| || ||||| || || | | | | || Sbjct 3942 TCTGGATAACATGACGCTGAGAAATCTCCCAAACAGTCTTATAGAGA-GCCTTGATGTCG 4000 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374 || || | |||| ||| | |||||| ||||| ||||| || ||| Sbjct 4001 GCGGGGATATTGGGGATGTTCTGAATGGAACCATTCTCGGCAATGATGCGGTTCTTCATG 4060 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATG-TTGA--ACCAAGTGACGATTGATGACT 65431 | || ||||| | ||||| |||| |||| |||| | | || | |||| ||| Sbjct 4061 GCATCAGACCAGAGACCCATGTCGACGAGATCCTTGAGGAGCCAGGGG---TTGACGACC 4117 Query 65432 TGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGAT 65491 ||||| || || | || ||||| || || |||||||||||| || |||||| | Sbjct 4118 TGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCAC 4177 Query 65492 TCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAG 65551 ||| |||| || |||||||| | || ||||| || ||||||||||||| || ||| ||| Sbjct 4178 TCATTGTTACCCAGAATTTGCGAGGTCGATGCGGTGGGCATGGGAGCGAGCAGCAACGAG 4237 Query 65552 TTTCGCAATCCGT 65564 || || | |||| Sbjct 4238 TTGCGAATACCGT 4250 >seq31 Length=45476 Score = 159 bits (176), Expect = 3e-34 Identities = 217/297 (73%), Gaps = 7/297 (2%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| ||||| || |||||||||| || ||| ||||| || Sbjct 39183 ATCTGGCAAATGTACAAGAAGGCTGAAGCCTCTTTCTGGACGGCCGAAGAGATCGATCTG 39242 Query 61147 TCCAAAGACATGAATGACTGG---GAGCGT-TTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||||||| || | || ||| | ||| | | ||| || || || | |||||| Sbjct 39243 TCCAAAGACTTGCACGATTGGAACAACCGTCTGAGCGA-CGACGAGAAATACTTCATTTC 39301 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 ||| | ||||| |||||||| ||||| ||||| || |||||||| || | | || || Sbjct 39302 ACACATTTTGGCATTCTTTGCTGCTTCTGACGGCATTGTCAATGAAAACCTTCTTGAGCG 39361 Query 61263 TTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 |||| ||| ||||| || || ||||||| ||||| ||||| || |||||||| | Sbjct 39362 TTTCAGCG-GCGAGGTTCAGGTTCCGGAGGCTCGTTGCTTCTATGGATTCCAGATCATGA 39420 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378 |||||||| | || || || | ||| | | || ||||||| ||||||| |||| Sbjct 39421 TGGAGAATATTCATTCTGAAACATACTCTCTCCTGATCGATAGCTACATCAAAGAGC 39477 Score = 120 bits (132), Expect = 2e-22 Identities = 336/504 (67%), Gaps = 15/504 (3%) Strand=Plus/Plus Query 61435 AAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA--TTTGGTGAACGAT 61492 ||||| || |||||| | |||||| ||| |||| | | || |||| | || | Sbjct 39591 AAAGCAGACTGGGCCATTCGTTGGATT--CAGGACAAGGATTCCAGCTTTGCCCAGCGCT 39648 Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 || |||| || || | || ||||| | || ||||| || | |||||| | || || | Sbjct 39649 TGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCGATTTTCT 39708 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCG 61612 || | ||||| ||||| || ||||| ||||| |||||| || || | || || || | Sbjct 39709 GGCTCAAGAAGCGTGGTCTGATGCCAGGTCTCACCTTCTCTAACGAACTTATCTCCCGTG 39768 Query 61613 ACGAGGGCATGCATTGTGATTTTGC-TGTTTTGCTATT-CAAACGCTATCTGGTGAATCG 61670 | ||||| |||| || ||||| ||| || || || ||| |||| | | || Sbjct 39769 ATGAGGGTTTGCACACAGACTTTGCCTGT----CTGTTGCACTCGC-ATCTCAAGCACCG 39823 Query 61671 TCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT 61730 | || | | | || ||| | || || || || || || || || Sbjct 39824 AGCCAGCAAGCAAGTTATCCAGGATATTATCACCGACGCTGTTGGCATTGAGCAAGAGTT 39883 Query 61731 TCTGACTGACGCTTTGCCCGTCT-CACTCATCGGCATGAATTGTGGACTAATGTCGCAGT 61789 | |||| || ||| | || || | | ||| | |||||||| ||||||| ||| | Sbjct 39884 TTTGACCGAGGCTCTTCC-GTGTGCTCTCCTAGGCATGAACGCCACACTAATGAAGCAAT 39942 Query 61790 ATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTAT-GAAGCGGATCTATAAT 61848 ||||||||||||| ||||| || || ||||| | | | |||| ||| || | || || Sbjct 39943 ATATTGAATTTGTCGCCGATCGCCTATTGGTTGCTCTTGGTAACGAAAAGG-TATACAAA 40001 Query 61849 ACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTC 61908 || ||||| || ||||||||||| | ||||| ||| ||||||||| || || ||| Sbjct 40002 ACCGCCAACCCCTTCGATTTCATGGAAAACATTTCCTTGGGTGGCAAGACAAACTTCTTC 40061 Query 61909 GAGAAACGTGTAGGCGACTATCAA 61932 ||||| || || || || |||||| Sbjct 40062 GAGAAGCGAGTTGGAGAATATCAA 40085 >seq31334 Length=230 Score = 98.7 bits (108), Expect = 8e-16 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 || ||||||||||| || | |||||| ||||| | ||| ||||| || ||||||| Sbjct 78 GGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTACTCGATG 137 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 || || |||||||| || || ||| ||||| |||| |||| || || ||||| | Sbjct 138 ATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTG 197 Query 66122 TTGCATGCATCCTTGTACA 66140 ||||| ||||||||||||| Sbjct 198 TTGCAGGCATCCTTGTACA 216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397391323638320