Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_029107.1 Length=41941 Score E Sequences producing significant alignments: (Bits) Value seq23686 147 6e-31 >seq23686 Length=244 Score = 147 bits (162), Expect = 6e-31 Identities = 161/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 16853 CCCGTTTGGCTGGATCAAGCACGTTCACAAAGCCAAGTCGGGCTATATGGCTCGCGCCGG 16912 ||||||||||||||| | |||||| ||||| |||| ||| ||||| | | ||| |||| Sbjct 239 CCCGTTTGGCTGGATGATGCACGTCCACAAGGCCATGTCCGGCTACACCGTGCGCTCCGG 180 Query 16913 CCTGCACCGCGTGCTGGCCTGGCCGTACCTGTTCAAGACCTACGCGGTGCGCGACCTGGC 16972 |||| ||||||||||| ||||| ||| |||||||| || | |||| |||||||||| Sbjct 179 CCTGGGCCGCGTGCTGGTGTGGCCCTACTTGTTCAAGCACTTCTCGGTTGGCGACCTGGC 120 Query 16973 CGAGCTGCTGGAGATTTACGGCATGCCCATCCGGCTGGGGAAGTACCCGAGCGGCGCGGG 17032 |||| | || || || ||||| |||| | || | || ||||| |||||| ||| | Sbjct 119 CGAGTTACTCGACATCTACGGTCTGCCGCTGCGCATCGGCAAGTATCCGAGCAACGCCAG 60 Query 17033 CGACAAGGAAAAGGCCGCACTGCTGCGTGCAGTC 17066 | | ||||||||||| | || ||| || ||| Sbjct 59 CCCCGAGGAAAAGGCCACGCTCTGGCGCGCCGTC 26 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134031539454618