Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq184 89.7 2e-12 >seq184 Length=26130 Score = 89.7 bits (98), Expect = 2e-12 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 364425 CAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGT 364484 |||| ||||| || |||||||||| | | ||||||||||||||||| ||| | || | Sbjct 24409 CAATCGTCATTCGCGAGGGAATGGCGTGTGGGTTGATGATGATGTCTGGCGTGACACCTT 24350 Query 364485 CAGCGGTAAAGGGCATATCTTC-GGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCA 364543 | ||||| ||||| || || | || | | ||| |||||| || ||||||||| | Sbjct 24349 CCCTAGTAAACGGCATGTCCTCTTGTCGGTAAG-TGACACCAATAGTGCCCTTTTGCCCG 24291 Query 364544 TAGCGAGAAGCAAACTTGTCGCCAAT 364569 | ||||| || |||||||| ||||| Sbjct 24290 TGACGAGAGGCGAACTTGTCTCCAAT 24265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884005814648459