Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30]
23,102 sequences; 53,344,113 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq387 232 1e-58
seq910 78.8 1e-12
>seq387
Length=34204
Score = 232 bits (256), Expect = 1e-58
Identities = 178/206 (86%), Gaps = 5/206 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| |
Sbjct 5204 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 5261
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | ||||||
Sbjct 5262 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 5321
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||| ||| ||||||||| || |||| || | | |||||||||||||||||||
Sbjct 5322 ACCCGGGCCTTCCGGCCAAGGGAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 5379
Query 180 GCCCAGAACATCTAAGGGCATCACAG 205
||||||||||||||||||||||||||
Sbjct 5380 GCCCAGAACATCTAAGGGCATCACAG 5405
>seq910
Length=17186
Score = 78.8 bits (86), Expect = 1e-12
Identities = 141/201 (70%), Gaps = 5/201 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||| |||||| ||||| || | |||| |||| || ||| |||||||||||| |||||
Sbjct 3057 GTATAAAGGGTAGGGATATAATTAACGTAAGCTA-ATAACTTGCGCTTACTAGGGATTTC 3115
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
| || |||| ||| |||| |||| |||||||| | | | | | ||| | ||||||
Sbjct 3116 TTA-TTAAAGAGCAATAATTACAATACTCTATCCCTAGTATAACGGAGTTTAATAAGATT 3174
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||| | ||| || |||| || ||| | | || ||||||||| | ||
Sbjct 3175 ACCTAGGCCTTCTAGCTAAGGGAGTA--CTCACTAGCTCTATTAGTGTAGCGTGTGTATA 3232
Query 180 GCCCAGAACATCTAAGGGCAT 200
||| |||| ||||||||||||
Sbjct 3233 GCCTAGAATATCTAAGGGCAT 3253
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751831701930
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |