Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq387 232 1e-58 seq910 78.8 1e-12 >seq387 Length=34204 Score = 232 bits (256), Expect = 1e-58 Identities = 178/206 (86%), Gaps = 5/206 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 5204 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 5261 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | |||||| Sbjct 5262 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 5321 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||||| || |||| || | | ||||||||||||||||||| Sbjct 5322 ACCCGGGCCTTCCGGCCAAGGGAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 5379 Query 180 GCCCAGAACATCTAAGGGCATCACAG 205 |||||||||||||||||||||||||| Sbjct 5380 GCCCAGAACATCTAAGGGCATCACAG 5405 >seq910 Length=17186 Score = 78.8 bits (86), Expect = 1e-12 Identities = 141/201 (70%), Gaps = 5/201 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| |||||| ||||| || | |||| |||| || ||| |||||||||||| ||||| Sbjct 3057 GTATAAAGGGTAGGGATATAATTAACGTAAGCTA-ATAACTTGCGCTTACTAGGGATTTC 3115 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 | || |||| ||| |||| |||| |||||||| | | | | | ||| | |||||| Sbjct 3116 TTA-TTAAAGAGCAATAATTACAATACTCTATCCCTAGTATAACGGAGTTTAATAAGATT 3174 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| | ||| || |||| || ||| | | || ||||||||| | || Sbjct 3175 ACCTAGGCCTTCTAGCTAAGGGAGTA--CTCACTAGCTCTATTAGTGTAGCGTGTGTATA 3232 Query 180 GCCCAGAACATCTAAGGGCAT 200 ||| |||| |||||||||||| Sbjct 3233 GCCTAGAATATCTAAGGGCAT 3253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751831701930