Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30]
23,102 sequences; 53,344,113 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq387 172 3e-41
seq11365 132 3e-29
seq910 77.0 2e-12
>seq387
Length=34204
Score = 172 bits (190), Expect = 3e-41
Identities = 109/117 (93%), Gaps = 1/117 (1%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
|| ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| ||
Sbjct 6139 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCC 6197
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 6198 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 6254
>seq11365
Length=342
Score = 132 bits (146), Expect = 3e-29
Identities = 93/105 (89%), Gaps = 1/105 (1%)
Strand=Plus/Minus
Query 11 ACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGT 70
||||||| |||||||||| |||||||| |||||||| ||||||||| ||| ||||||||
Sbjct 159 ACTTTGAGTTCTCGTAAGTTGCCGAGCTAGTCAAAAA-ATAACATCGTCCGTTCCCTAGT 101
Query 71 CGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115
|||||||| ||| ||||||||||||| || | |||||||||||||
Sbjct 100 CGGCATAGGTTATGGTTAAGACTACGTCGCTGTCTGATCGTCTTC 56
>seq910
Length=17186
Score = 77.0 bits (84), Expect = 2e-12
Identities = 80/104 (77%), Gaps = 1/104 (1%)
Strand=Plus/Plus
Query 11 ACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGT 70
|||||||||||| |||||||| | |||| |||| ||||||| | |||||||||
Sbjct 4001 ACTTTGATTTCTTATAAGGTGCTAAATGAGTTAAAA-AATAACATTATCTAATCCCTAGT 4059
Query 71 CGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTT 114
|||||||||| |||||||||| || |||||| || ||||
Sbjct 4060 TAGCATAGTTTATAGTTAAGACTATGATAGTATCTAATTATCTT 4103
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 278339703780
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |