Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq387 172 3e-41 seq11365 132 3e-29 seq910 77.0 2e-12 >seq387 Length=34204 Score = 172 bits (190), Expect = 3e-41 Identities = 109/117 (93%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct 6139 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCC 6197 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 6198 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 6254 >seq11365 Length=342 Score = 132 bits (146), Expect = 3e-29 Identities = 93/105 (89%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 11 ACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGT 70 ||||||| |||||||||| |||||||| |||||||| ||||||||| ||| |||||||| Sbjct 159 ACTTTGAGTTCTCGTAAGTTGCCGAGCTAGTCAAAAA-ATAACATCGTCCGTTCCCTAGT 101 Query 71 CGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 |||||||| ||| ||||||||||||| || | ||||||||||||| Sbjct 100 CGGCATAGGTTATGGTTAAGACTACGTCGCTGTCTGATCGTCTTC 56 >seq910 Length=17186 Score = 77.0 bits (84), Expect = 2e-12 Identities = 80/104 (77%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 11 ACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGT 70 |||||||||||| |||||||| | |||| |||| ||||||| | ||||||||| Sbjct 4001 ACTTTGATTTCTTATAAGGTGCTAAATGAGTTAAAA-AATAACATTATCTAATCCCTAGT 4059 Query 71 CGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTT 114 |||||||||| |||||||||| || |||||| || |||| Sbjct 4060 TAGCATAGTTTATAGTTAAGACTATGATAGTATCTAATTATCTT 4103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278339703780