Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30]
23,102 sequences; 53,344,113 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq387 464 1e-128
seq910 291 1e-76
>seq387
Length=34204
Score = 464 bits (514), Expect = 1e-128
Identities = 292/314 (93%), Gaps = 1/314 (0%)
Strand=Plus/Minus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
|||||||||||||||||||| |||| ||| || |||||||||||||||| ||| ||||||
Sbjct 6568 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGCGTGGCGGGGA 6509
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124
|||||||||||||||||||||||||||||| || | |||||||| |||||||||||||
Sbjct 6508 AACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 6449
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 6448 TAGCATGGAATAATGAAATAGGACGCGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 6389
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 6388 AATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 6329
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 6328 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-GA 6270
Query 305 ACGAAAGTTAGGGG 318
||||||||||||||
Sbjct 6269 ACGAAAGTTAGGGG 6256
>seq910
Length=17186
Score = 291 bits (322), Expect = 1e-76
Identities = 247/303 (82%), Gaps = 1/303 (0%)
Strand=Plus/Minus
Query 16 GGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTT 75
||||||||| ||| || || |||||||| ||| || || |||| ||||||||
Sbjct 4409 GGCCTTTCCCTCTATAGAACCCTATGCCCTTTACTAGGCGTAGTAGGGAAATAGGACTTT 4350
Query 76 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAAT 135
|||||| |||||||||||||| || | ||| |||| |||| |||| |||||||| ||||
Sbjct 4349 TACTTTAAAAAAATTAGAGTGCTCTAGGCAAGCCTATGCTTAAATATATTAGCATAGAAT 4290
Query 136 AATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATA 195
|||| |||||||| ||| ||||||||| || |||||||||||| ||||||| |||||||
Sbjct 4289 AATAAAATAGGACACGCGATTCTATTTTATTAGTTTCTAGGACCACCGTAATAATTAATA 4230
Query 196 GGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAG 255
|||||||| |||| | |||||| |||| | ||||||||||||||| |||||||| |||
Sbjct 4229 GGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTGAAATTCTTAGATTTATTAAAG 4170
Query 256 ACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315
|||||||||||| ||||| || | ||||||||||| |||||| || || ||||||||
Sbjct 4169 ACTAACTACTGCAAAAGCATTTGCTAAGGATGTTTTTATTAATTAG-AAATAAAAGTTAG 4111
Query 316 GGG 318
|||
Sbjct 4110 GGG 4108
Score = 248 bits (274), Expect = 2e-63
Identities = 237/302 (78%), Gaps = 1/302 (0%)
Strand=Plus/Minus
Query 16 GGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTT 75
||||||||| ||| | || |||||||| ||| | | | |||| ||||||||
Sbjct 14052 GGCCTTTCCCTCTATAAAACCCTATGCCCTTTACTAAGCATAGCAGGGAAATAGGACTTT 13993
Query 76 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAAT 135
|||||| |||||||||||||| || | |||||||| |||| |||| |||||||| ||||
Sbjct 13992 TACTTTAAAAAAATTAGAGTGCTCTAGGCAGGCCTATGCTTAAATATATTAGCATAGAAT 13933
Query 136 AATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATA 195
|||| |||||||| | ||| |||||| || ||||||||||| | |||| |||||||
Sbjct 13932 AATAAAATAGGACATATAGTTTTATTTTATTAGTTTCTAGGACTACTATAATAATTAATA 13873
Query 196 GGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAG 255
||||||| ||||| | |||||| |||| | ||||||||||||||| |||||||| |||
Sbjct 13872 AGGATAGTTAGGGGTATTAGTATTTAATTATTAGAGGTGAAATTCTTAGATTTATTAAAG 13813
Query 256 ACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315
|||||||||| |||| || | |||||| |||| |||||| || ||| ||||||||
Sbjct 13812 ACTAACTACTATAAAAGTATTTGCTAAGGATATTTTTATTAATTAG-GAATAAAAGTTAG 13754
Query 316 GG 317
||
Sbjct 13753 GG 13752
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 914988570496
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |