Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq387 464 1e-128 seq910 291 1e-76 >seq387 Length=34204 Score = 464 bits (514), Expect = 1e-128 Identities = 292/314 (93%), Gaps = 1/314 (0%) Strand=Plus/Minus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 |||||||||||||||||||| |||| ||| || |||||||||||||||| ||| |||||| Sbjct 6568 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGCGTGGCGGGGA 6509 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 |||||||||||||||||||||||||||||| || | |||||||| ||||||||||||| Sbjct 6508 AACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 6449 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 6448 TAGCATGGAATAATGAAATAGGACGCGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 6389 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 6388 AATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 6329 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || Sbjct 6328 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-GA 6270 Query 305 ACGAAAGTTAGGGG 318 |||||||||||||| Sbjct 6269 ACGAAAGTTAGGGG 6256 >seq910 Length=17186 Score = 291 bits (322), Expect = 1e-76 Identities = 247/303 (82%), Gaps = 1/303 (0%) Strand=Plus/Minus Query 16 GGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTT 75 ||||||||| ||| || || |||||||| ||| || || |||| |||||||| Sbjct 4409 GGCCTTTCCCTCTATAGAACCCTATGCCCTTTACTAGGCGTAGTAGGGAAATAGGACTTT 4350 Query 76 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAAT 135 |||||| |||||||||||||| || | ||| |||| |||| |||| |||||||| |||| Sbjct 4349 TACTTTAAAAAAATTAGAGTGCTCTAGGCAAGCCTATGCTTAAATATATTAGCATAGAAT 4290 Query 136 AATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATA 195 |||| |||||||| ||| ||||||||| || |||||||||||| ||||||| ||||||| Sbjct 4289 AATAAAATAGGACACGCGATTCTATTTTATTAGTTTCTAGGACCACCGTAATAATTAATA 4230 Query 196 GGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAG 255 |||||||| |||| | |||||| |||| | ||||||||||||||| |||||||| ||| Sbjct 4229 GGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTGAAATTCTTAGATTTATTAAAG 4170 Query 256 ACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 |||||||||||| ||||| || | ||||||||||| |||||| || || |||||||| Sbjct 4169 ACTAACTACTGCAAAAGCATTTGCTAAGGATGTTTTTATTAATTAG-AAATAAAAGTTAG 4111 Query 316 GGG 318 ||| Sbjct 4110 GGG 4108 Score = 248 bits (274), Expect = 2e-63 Identities = 237/302 (78%), Gaps = 1/302 (0%) Strand=Plus/Minus Query 16 GGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTT 75 ||||||||| ||| | || |||||||| ||| | | | |||| |||||||| Sbjct 14052 GGCCTTTCCCTCTATAAAACCCTATGCCCTTTACTAAGCATAGCAGGGAAATAGGACTTT 13993 Query 76 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAAT 135 |||||| |||||||||||||| || | |||||||| |||| |||| |||||||| |||| Sbjct 13992 TACTTTAAAAAAATTAGAGTGCTCTAGGCAGGCCTATGCTTAAATATATTAGCATAGAAT 13933 Query 136 AATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATA 195 |||| |||||||| | ||| |||||| || ||||||||||| | |||| ||||||| Sbjct 13932 AATAAAATAGGACATATAGTTTTATTTTATTAGTTTCTAGGACTACTATAATAATTAATA 13873 Query 196 GGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAG 255 ||||||| ||||| | |||||| |||| | ||||||||||||||| |||||||| ||| Sbjct 13872 AGGATAGTTAGGGGTATTAGTATTTAATTATTAGAGGTGAAATTCTTAGATTTATTAAAG 13813 Query 256 ACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 |||||||||| |||| || | |||||| |||| |||||| || ||| |||||||| Sbjct 13812 ACTAACTACTATAAAAGTATTTGCTAAGGATATTTTTATTAATTAG-GAATAAAAGTTAG 13754 Query 316 GG 317 || Sbjct 13753 GG 13752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914988570496