Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq387 702 0.0 seq910 282 2e-73 seq9746 215 2e-53 seq17947 145 3e-32 seq13151 96.9 1e-17 >seq387 Length=34204 Score = 702 bits (778), Expect = 0.0 Identities = 563/672 (84%), Gaps = 10/672 (1%) Strand=Plus/Minus Query 14 GCCTAGCCG-TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATG 72 ||| |||| ||| |||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 4301 GCCGAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATG 4242 Query 73 GGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 132 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4241 GGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 4182 Query 133 GATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAG 192 |||||||||||||||||||||||| |||||| |||||| || |||||||||||||||||| Sbjct 4181 GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTGTTGAAAG 4122 Query 193 GGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGC-CCCTCGGCCGGTGCAC 251 ||||||||| |||||||||| | | || ||| || || ||| || ||||||| Sbjct 4121 GGAAGCGCTCATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTC-GCTGGTGCAC 4063 Query 252 TCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGC 311 | | | | |||||||||||||| ||| | | ||| |||||| | ||||||||||| Sbjct 4062 TTCGCCGGGCCCAGGCCAGCATCAGTTCGCCCCGGGGGACAAAGGCTCTGGGAATGTGGC 4003 Query 312 CCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCG 371 || || ||| |||||||||||| | | ||||| | | ||||||||||||||| Sbjct 4002 TCC--TCCGGGAGTGTTATAGCCCTCTGCGCAATGC-CCTGGGGCGGACTGAGGTCCGCG 3946 Query 372 CTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGG 431 | | || ||||||||||||||||||| | |||| ||||||||| |||||||||||||| Sbjct 3945 CATCTGCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACCAAGG 3886 Query 432 AGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGG 491 |||| | |||||||||||| |||||| |||||| | ||||||||||||||||||| Sbjct 3885 AGTCGTCCTCGTATGCGAGTGTTCGGGTGTGAAACCCCTACGCGTAATGAAAGTGAACGC 3826 Query 492 AGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAG 551 ||||| || | || ||| ||||||||||||||||||| ||||||||||||||| Sbjct 3825 AGGTGAGA----GCTTCGGCGCATCATCGACCGATCCTGATGTTCTCGGATGGATTTGAG 3770 Query 552 TAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCA 611 || ||||||| | |||||||||||| ||||||||||||||| |||||||||||||| Sbjct 3769 TAGGAGCATACGGGGCCGGACCCGAAAGAAGGTGAACTATGCCTGTATAGGGTGAAGCCA 3710 Query 612 GAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGG 671 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| Sbjct 3709 GAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATATGG 3650 Query 672 GTATAGGGGCGA 683 | || ||||||| Sbjct 3649 GCATGGGGGCGA 3638 >seq910 Length=17186 Score = 282 bits (312), Expect = 2e-73 Identities = 458/655 (70%), Gaps = 7/655 (1%) Strand=Plus/Minus Query 27 AAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCT 86 ||||||||| | ||| ||| |||| ||||| | ||| ||||| | ||||| || | | Sbjct 2135 AAGCTCCTTTAATAAGTTAAGTAGTTTAGGAATACTGCTTTAAATAGAAGGTATATATTT 2076 Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146 |||||||||||||||| || |||||| |||||||| ||||| ||| || |||||| || Sbjct 2075 TCTAAAGCTAAATATTAGCTAGAGACTAATAGCGCATAAGTAAAGTAATTAAAAGATAAA 2016 Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAA 206 ||||||||| ||||||||||||| || | | ||||| || ||||| |||||||| || Sbjct 2015 AAGCACTTTAAAAAGAGAGTTAAATAGTATATAAAATTATTAAAAGGAAAGCGCTTATAA 1956 Query 207 CCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGTCAGG 266 | |||||| | ||| | | | || | ||||||| || | ||| Sbjct 1955 CTAGACTTAGGCCTAGTAAATTATCTAGCGTTCTTACTAGTGCACTTCGCTAGGCCTAGG 1896 Query 267 CCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTG 326 | ||||| || ||| | ||| |||||| ||||| | || || || || ||| Sbjct 1895 CTAGCATTAGTTCGCCCTAGGGGACAAAGGCTTTAGGAATATAGCTCC--TCTAGGAGTG 1838 Query 327 TTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAGGATGC 386 ||||||||| | ||||| | | |||| |||||| ||| | | || || | Sbjct 1837 TTATAGCCCTCTACGCAATGC-CCTAGGGCAGACTAAGGTCCACGCATCTACAAGAATAC 1779 Query 387 TGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATG 446 | ||||||| ||| | ||| || ||||| |||| ||| ||||||| | | ||| Sbjct 1778 TAGCGTAATAGTTATTAGCAACCTGTCTTAAAACATAGACTAAGGAGTTATCCTTATATA 1719 Query 447 CGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTG 506 ||||||| ||| | |||||| | | |||||| ||||| |||| | || || | | Sbjct 1718 TAAGTGTTTAGGTATAAAACCCTTACACGTAATAAAAGTAAACGTAAGTAAGA--GCTTT 1661 Query 507 AGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGT 566 | | ||| || || ||||| |||| | |||| ||||| |||||||||||| | Sbjct 1660 A--GCGCATTATTAACTAATCCTAATGTTCTTGGATAGATTTAAGTAAGAGCATATAAGG 1603 Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 |||| ||||| ||| |||||||||| ||||||| |||| |||||||||||| || Sbjct 1602 CTAGACCTAAAAGAAGGTAAACTATGCCTATATAGGGTAAAGCTAGAGGAAACTCTAGTA 1543 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||||| ||||||||| |||| |||| || | |||| | || |||||||| Sbjct 1542 GAGGCTTATAGCGGTTCTAACGTGTAAATTAATTATTAAATATAGGCATAGGGGC 1488 Score = 219 bits (242), Expect = 2e-54 Identities = 444/655 (68%), Gaps = 7/655 (1%) Strand=Plus/Minus Query 27 AAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCT 86 ||||||||| | ||| ||| |||| | ||| | || ||||| ||||||| || | | Sbjct 11778 AAGCTCCTTTAATAAGTTAAGTAGTTTAGAAATACTACTTTAAATAGGAGGTATATATTT 11719 Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146 |||||||||||||||| || |||||| ||||| | ||||| ||| || |||||| || Sbjct 11718 TCTAAAGCTAAATATTAGCTAGAGACTAATAGCATATAAGTAAAGTAATTAAAAGATAAA 11659 Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAA 206 ||||||||| |||||| |||||| | |||| ||||| || |||||||||||||| || Sbjct 11658 AAGCACTTTAAAAAGAGGGTTAAATAATACGTAAAATTATTAAAAGGGAAGCGCTTATAA 11599 Query 207 CCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGTCAGG 266 | |||||| | ||| | | | || | ||||||| | || | ||| Sbjct 11598 CTAGACTTAGGCCTAGTAAATTATCTAGCGTTCTTACTAGTGCACTTTACTAGGCCTAGG 11539 Query 267 CCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTG 326 | | ||| || | | |||||||||| | ||||| | || | || || ||| Sbjct 11538 CTAACATTAGTTTACCCTAAGGGATAAAGGCTCTAGGAATATAGCTTC--TCTAGGAGTG 11481 Query 327 TTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAGGATGC 386 ||||||||| | | ||||| | | |||| ||||||||| | || || | Sbjct 11480 TTATAGCCCTCTGCGTAATGC-CCTAGGGCAGACTAAGGTCCGCGTATCTATAAGAATAC 11422 Query 387 TGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATG 446 | ||||||| ||| | || || |||| |||| ||| ||||||| | | ||| Sbjct 11421 TAGCGTAATAGTTATTAGTAACCTATCTTAAAACATAGACTAAGGAGTTATCCTTATATA 11362 Query 447 CGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTG 506 ||| ||| |||| |||||| | | ||||| ||||| || | || || | | Sbjct 11361 TAAGTATTTAAGTGTAAAACCCCTATGTGTAATAAAAGTAAATATAAGTAAGA--GCTTT 11304 Query 507 AGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGT 566 || | | || || ||||| || | | ||| ||||| |||||||||||| | Sbjct 11303 AGCAT--ATTATTAACTAATCCTAATATTCTTAGATAGATTTAAGTAAGAGCATATAAGG 11246 Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 |||| ||||| |||||||||||||| ||||||| |||| |||||||||||| || Sbjct 11245 CTAGACCTAAAAGAAGGTGAACTATGCCTATATAGGGTAAAGCTAGAGGAAACTCTAGTA 11186 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||||| | || ||||| |||| |||| || | |||| | | |||||||| Sbjct 11185 AAGGCTTGTAGTAGTTCTAACGTGTAAATTAATTATTAAATATAAGCATAGGGGC 11131 >seq9746 Length=385 Score = 215 bits (238), Expect = 2e-53 Identities = 287/391 (73%), Gaps = 11/391 (3%) Strand=Plus/Plus Query 31 TCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTA 90 |||||||||||||| ||| || ||||||||| |||||||||||| |||| | ||||||| Sbjct 1 TCCTTCGACGAGTCTAGTAGTCTGGGAATGCTGCTCTAAATGGGTGGTATTTGTCTTCTA 60 Query 91 AAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGC 150 | |||| ||||||||||||| ||||| |||||||||| |||||||||| | |||||||| Sbjct 61 ATGCTATATATTGGCCAGAGTCCGATCGCGCACAAGTTGAGTGATCGATCGTTGAAAAGC 120 Query 151 ACTTTGGAAAGAGAGTTAAAAAGCA-CGTGAAATTGTTGAAAGGGAAGC-GCTTGCAACC 208 |||||| || ||| | |||| || | || || | || || ||||| ||| ||| Sbjct 121 ACTTTGAAACGAGGGATAAATAGTAGCGGGATAGGAGTGCAACCGAAGCGGCTCATGACC 180 Query 209 AGACTT--GCCCGCAGTTGC-TCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGTCAG 265 | ||| ||||| | || || | || ||| || || |||| | | | ||| Sbjct 181 CGTCTTGGGCCCGGTGAAGCATCCAGCGTGCCC---GCTGGAGCACGTCGCCGGGCCCAG 237 Query 266 GCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGT 325 ||||||| ||| || | | ||| | ||| | ||||| |||| | | || ||| || Sbjct 238 GCCAGCACCAGTACGCCCCGGGGGACGACGGCTCTGGGAAGGTGG--CTCGTCCGGGAGT 295 Query 326 GTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAGGATG 385 |||||||||| | | ||||| | | |||||||||||||||| | || |||||| Sbjct 296 GTTATAGCCCTCTGCGCAATGC-CCTGGGGCGGACTGAGGTCCGCGCATCTGCAAGGATG 354 Query 386 CTGGCGTAATGGTTGTAAGCGGCCCGTCTTG 416 ||||||||||||| | |||| ||| ||||| Sbjct 355 CTGGCGTAATGGTCATCAGCGACCCTTCTTG 385 >seq17947 Length=250 Score = 145 bits (160), Expect = 3e-32 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 27 AAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCT 86 ||||||||| | ||| ||| |||| ||||| | || || || | ||||| || | | Sbjct 28 AAGCTCCTTTAATAAGTTAAGTAGTTTAGGAATACTGCCTTAGATAGAAGGTATATATTT 87 Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146 ||||||||||| |||| || |||||| |||||||| |||| ||| || |||||| || Sbjct 88 TCTAAAGCTAACTATTAGCTAGAGACTAATAGCGCATCAGTAAAGTAATTAAAAGATAAA 147 Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAA 206 | ||||||| |||||||||||||| || | | ||||| || ||||| |||||||| || Sbjct 148 ACGCACTTTAGAAAGAGAGTTAAATAGTATATAAAATTATTAAAAGGAAAGCGCTTATAA 207 Query 207 CCAGACTT 214 | |||||| Sbjct 208 CTAGACTT 215 >seq13151 Length=295 Score = 96.9 bits (106), Expect = 1e-17 Identities = 100/130 (77%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 24 GTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATT 83 || |||||||| |||||| ||| || ||||| ||||| ||||| | | ||| | Sbjct 129 GTAAAGCTCCTAAGACGAGCAGAGGAGTCAAGGAATACAGCTATAAATAGCACGTAGAGA 188 Query 84 TCTTCTAAAGCTAAATATTGGCCAGAGACCGATAG-CGCACAAGTAGAGTGATCGAAAGA 142 ||||||||| ||||||||| |||||| ||||| | ||||||||||||||||||| | Sbjct 189 GATTCTAAAGCAAAATATTGGGAAGAGACAGATAGACCCACAAGTAGAGTGATCGAACAA 248 Query 143 TGAAAAGCAC 152 | ||| |||| Sbjct 249 TAAAACGCAC 258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079504462100