Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30]
23,102 sequences; 53,344,113 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq387 702 0.0
seq910 282 2e-73
seq9746 215 2e-53
seq17947 145 3e-32
seq13151 96.9 1e-17
>seq387
Length=34204
Score = 702 bits (778), Expect = 0.0
Identities = 563/672 (84%), Gaps = 10/672 (1%)
Strand=Plus/Minus
Query 14 GCCTAGCCG-TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATG 72
||| |||| ||| |||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 4301 GCCGAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATG 4242
Query 73 GGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 132
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4241 GGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 4182
Query 133 GATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAG 192
|||||||||||||||||||||||| |||||| |||||| || ||||||||||||||||||
Sbjct 4181 GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTGTTGAAAG 4122
Query 193 GGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGC-CCCTCGGCCGGTGCAC 251
||||||||| |||||||||| | | || ||| || || ||| || |||||||
Sbjct 4121 GGAAGCGCTCATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTC-GCTGGTGCAC 4063
Query 252 TCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGC 311
| | | | |||||||||||||| ||| | | ||| |||||| | |||||||||||
Sbjct 4062 TTCGCCGGGCCCAGGCCAGCATCAGTTCGCCCCGGGGGACAAAGGCTCTGGGAATGTGGC 4003
Query 312 CCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCG 371
|| || ||| |||||||||||| | | ||||| | | |||||||||||||||
Sbjct 4002 TCC--TCCGGGAGTGTTATAGCCCTCTGCGCAATGC-CCTGGGGCGGACTGAGGTCCGCG 3946
Query 372 CTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGG 431
| | || ||||||||||||||||||| | |||| ||||||||| ||||||||||||||
Sbjct 3945 CATCTGCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACCAAGG 3886
Query 432 AGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGG 491
|||| | |||||||||||| |||||| |||||| | |||||||||||||||||||
Sbjct 3885 AGTCGTCCTCGTATGCGAGTGTTCGGGTGTGAAACCCCTACGCGTAATGAAAGTGAACGC 3826
Query 492 AGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAG 551
||||| || | || ||| ||||||||||||||||||| |||||||||||||||
Sbjct 3825 AGGTGAGA----GCTTCGGCGCATCATCGACCGATCCTGATGTTCTCGGATGGATTTGAG 3770
Query 552 TAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCA 611
|| ||||||| | |||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 3769 TAGGAGCATACGGGGCCGGACCCGAAAGAAGGTGAACTATGCCTGTATAGGGTGAAGCCA 3710
Query 612 GAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGG 671
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 3709 GAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATATGG 3650
Query 672 GTATAGGGGCGA 683
| || |||||||
Sbjct 3649 GCATGGGGGCGA 3638
>seq910
Length=17186
Score = 282 bits (312), Expect = 2e-73
Identities = 458/655 (70%), Gaps = 7/655 (1%)
Strand=Plus/Minus
Query 27 AAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCT 86
||||||||| | ||| ||| |||| ||||| | ||| ||||| | ||||| || | |
Sbjct 2135 AAGCTCCTTTAATAAGTTAAGTAGTTTAGGAATACTGCTTTAAATAGAAGGTATATATTT 2076
Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146
|||||||||||||||| || |||||| |||||||| ||||| ||| || |||||| ||
Sbjct 2075 TCTAAAGCTAAATATTAGCTAGAGACTAATAGCGCATAAGTAAAGTAATTAAAAGATAAA 2016
Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAA 206
||||||||| ||||||||||||| || | | ||||| || ||||| |||||||| ||
Sbjct 2015 AAGCACTTTAAAAAGAGAGTTAAATAGTATATAAAATTATTAAAAGGAAAGCGCTTATAA 1956
Query 207 CCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGTCAGG 266
| |||||| | ||| | | | || | ||||||| || | |||
Sbjct 1955 CTAGACTTAGGCCTAGTAAATTATCTAGCGTTCTTACTAGTGCACTTCGCTAGGCCTAGG 1896
Query 267 CCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTG 326
| ||||| || ||| | ||| |||||| ||||| | || || || || |||
Sbjct 1895 CTAGCATTAGTTCGCCCTAGGGGACAAAGGCTTTAGGAATATAGCTCC--TCTAGGAGTG 1838
Query 327 TTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAGGATGC 386
||||||||| | ||||| | | |||| |||||| ||| | | || || |
Sbjct 1837 TTATAGCCCTCTACGCAATGC-CCTAGGGCAGACTAAGGTCCACGCATCTACAAGAATAC 1779
Query 387 TGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATG 446
| ||||||| ||| | ||| || ||||| |||| ||| ||||||| | | |||
Sbjct 1778 TAGCGTAATAGTTATTAGCAACCTGTCTTAAAACATAGACTAAGGAGTTATCCTTATATA 1719
Query 447 CGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTG 506
||||||| ||| | |||||| | | |||||| ||||| |||| | || || | |
Sbjct 1718 TAAGTGTTTAGGTATAAAACCCTTACACGTAATAAAAGTAAACGTAAGTAAGA--GCTTT 1661
Query 507 AGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGT 566
| | ||| || || ||||| |||| | |||| ||||| |||||||||||| |
Sbjct 1660 A--GCGCATTATTAACTAATCCTAATGTTCTTGGATAGATTTAAGTAAGAGCATATAAGG 1603
Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626
|||| ||||| ||| |||||||||| ||||||| |||| |||||||||||| ||
Sbjct 1602 CTAGACCTAAAAGAAGGTAAACTATGCCTATATAGGGTAAAGCTAGAGGAAACTCTAGTA 1543
Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
|||||| ||||||||| |||| |||| || | |||| | || ||||||||
Sbjct 1542 GAGGCTTATAGCGGTTCTAACGTGTAAATTAATTATTAAATATAGGCATAGGGGC 1488
Score = 219 bits (242), Expect = 2e-54
Identities = 444/655 (68%), Gaps = 7/655 (1%)
Strand=Plus/Minus
Query 27 AAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCT 86
||||||||| | ||| ||| |||| | ||| | || ||||| ||||||| || | |
Sbjct 11778 AAGCTCCTTTAATAAGTTAAGTAGTTTAGAAATACTACTTTAAATAGGAGGTATATATTT 11719
Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146
|||||||||||||||| || |||||| ||||| | ||||| ||| || |||||| ||
Sbjct 11718 TCTAAAGCTAAATATTAGCTAGAGACTAATAGCATATAAGTAAAGTAATTAAAAGATAAA 11659
Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAA 206
||||||||| |||||| |||||| | |||| ||||| || |||||||||||||| ||
Sbjct 11658 AAGCACTTTAAAAAGAGGGTTAAATAATACGTAAAATTATTAAAAGGGAAGCGCTTATAA 11599
Query 207 CCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGTCAGG 266
| |||||| | ||| | | | || | ||||||| | || | |||
Sbjct 11598 CTAGACTTAGGCCTAGTAAATTATCTAGCGTTCTTACTAGTGCACTTTACTAGGCCTAGG 11539
Query 267 CCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTG 326
| | ||| || | | |||||||||| | ||||| | || | || || |||
Sbjct 11538 CTAACATTAGTTTACCCTAAGGGATAAAGGCTCTAGGAATATAGCTTC--TCTAGGAGTG 11481
Query 327 TTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAGGATGC 386
||||||||| | | ||||| | | |||| ||||||||| | || || |
Sbjct 11480 TTATAGCCCTCTGCGTAATGC-CCTAGGGCAGACTAAGGTCCGCGTATCTATAAGAATAC 11422
Query 387 TGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATG 446
| ||||||| ||| | || || |||| |||| ||| ||||||| | | |||
Sbjct 11421 TAGCGTAATAGTTATTAGTAACCTATCTTAAAACATAGACTAAGGAGTTATCCTTATATA 11362
Query 447 CGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTG 506
||| ||| |||| |||||| | | ||||| ||||| || | || || | |
Sbjct 11361 TAAGTATTTAAGTGTAAAACCCCTATGTGTAATAAAAGTAAATATAAGTAAGA--GCTTT 11304
Query 507 AGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGT 566
|| | | || || ||||| || | | ||| ||||| |||||||||||| |
Sbjct 11303 AGCAT--ATTATTAACTAATCCTAATATTCTTAGATAGATTTAAGTAAGAGCATATAAGG 11246
Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626
|||| ||||| |||||||||||||| ||||||| |||| |||||||||||| ||
Sbjct 11245 CTAGACCTAAAAGAAGGTGAACTATGCCTATATAGGGTAAAGCTAGAGGAAACTCTAGTA 11186
Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
||||| | || ||||| |||| |||| || | |||| | | ||||||||
Sbjct 11185 AAGGCTTGTAGTAGTTCTAACGTGTAAATTAATTATTAAATATAAGCATAGGGGC 11131
>seq9746
Length=385
Score = 215 bits (238), Expect = 2e-53
Identities = 287/391 (73%), Gaps = 11/391 (3%)
Strand=Plus/Plus
Query 31 TCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTA 90
|||||||||||||| ||| || ||||||||| |||||||||||| |||| | |||||||
Sbjct 1 TCCTTCGACGAGTCTAGTAGTCTGGGAATGCTGCTCTAAATGGGTGGTATTTGTCTTCTA 60
Query 91 AAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGC 150
| |||| ||||||||||||| ||||| |||||||||| |||||||||| | ||||||||
Sbjct 61 ATGCTATATATTGGCCAGAGTCCGATCGCGCACAAGTTGAGTGATCGATCGTTGAAAAGC 120
Query 151 ACTTTGGAAAGAGAGTTAAAAAGCA-CGTGAAATTGTTGAAAGGGAAGC-GCTTGCAACC 208
|||||| || ||| | |||| || | || || | || || ||||| ||| |||
Sbjct 121 ACTTTGAAACGAGGGATAAATAGTAGCGGGATAGGAGTGCAACCGAAGCGGCTCATGACC 180
Query 209 AGACTT--GCCCGCAGTTGC-TCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGTCAG 265
| ||| ||||| | || || | || ||| || || |||| | | | |||
Sbjct 181 CGTCTTGGGCCCGGTGAAGCATCCAGCGTGCCC---GCTGGAGCACGTCGCCGGGCCCAG 237
Query 266 GCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGT 325
||||||| ||| || | | ||| | ||| | ||||| |||| | | || ||| ||
Sbjct 238 GCCAGCACCAGTACGCCCCGGGGGACGACGGCTCTGGGAAGGTGG--CTCGTCCGGGAGT 295
Query 326 GTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAGGATG 385
|||||||||| | | ||||| | | |||||||||||||||| | || ||||||
Sbjct 296 GTTATAGCCCTCTGCGCAATGC-CCTGGGGCGGACTGAGGTCCGCGCATCTGCAAGGATG 354
Query 386 CTGGCGTAATGGTTGTAAGCGGCCCGTCTTG 416
||||||||||||| | |||| ||| |||||
Sbjct 355 CTGGCGTAATGGTCATCAGCGACCCTTCTTG 385
>seq17947
Length=250
Score = 145 bits (160), Expect = 3e-32
Identities = 145/188 (77%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 27 AAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCT 86
||||||||| | ||| ||| |||| ||||| | || || || | ||||| || | |
Sbjct 28 AAGCTCCTTTAATAAGTTAAGTAGTTTAGGAATACTGCCTTAGATAGAAGGTATATATTT 87
Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146
||||||||||| |||| || |||||| |||||||| |||| ||| || |||||| ||
Sbjct 88 TCTAAAGCTAACTATTAGCTAGAGACTAATAGCGCATCAGTAAAGTAATTAAAAGATAAA 147
Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAA 206
| ||||||| |||||||||||||| || | | ||||| || ||||| |||||||| ||
Sbjct 148 ACGCACTTTAGAAAGAGAGTTAAATAGTATATAAAATTATTAAAAGGAAAGCGCTTATAA 207
Query 207 CCAGACTT 214
| ||||||
Sbjct 208 CTAGACTT 215
>seq13151
Length=295
Score = 96.9 bits (106), Expect = 1e-17
Identities = 100/130 (77%), Gaps = 1/130 (1%)
Strand=Plus/Plus
Query 24 GTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATT 83
|| |||||||| |||||| ||| || ||||| ||||| ||||| | | ||| |
Sbjct 129 GTAAAGCTCCTAAGACGAGCAGAGGAGTCAAGGAATACAGCTATAAATAGCACGTAGAGA 188
Query 84 TCTTCTAAAGCTAAATATTGGCCAGAGACCGATAG-CGCACAAGTAGAGTGATCGAAAGA 142
||||||||| ||||||||| |||||| ||||| | ||||||||||||||||||| |
Sbjct 189 GATTCTAAAGCAAAATATTGGGAAGAGACAGATAGACCCACAAGTAGAGTGATCGAACAA 248
Query 143 TGAAAAGCAC 152
| ||| ||||
Sbjct 249 TAAAACGCAC 258
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079504462100
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