Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq46 75.2 1e-11 >seq46 Length=85326 Score = 75.2 bits (82), Expect = 1e-11 Identities = 70/87 (80%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 69 CGACTGTTTATTAAAAACACAGCACTCTGC--AAACACG-AAAGTGGACGTATAGGGTGT 125 |||||||||| | ||||||||||||||||| ||| | | ||| | | |||||| |||| Sbjct 21301 CGACTGTTTAATTAAAACACAGCACTCTGCTGAAAGATGAAAAATCTAAGTATAGAGTGT 21242 Query 126 GACGCCTGCCCGGTGCCGGAAGGTTAA 152 || |||||||||||||| |||||| Sbjct 21241 GATATCTGCCCGGTGCCGGCTGGTTAA 21215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476693291862