Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq46 98.7 3e-18 >seq46 Length=85326 Score = 98.7 bits (108), Expect = 3e-18 Identities = 149/208 (72%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 78 ATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTT 137 |||| |||| | | | | ||| | | ||||| ||||||||||||||||||| | | ||| Sbjct 21095 ATTCATGCAAGACCGCATTTAACGGCCAAGGCATTTCGCTACCTTAGGACCCTCAC-GTT 21153 Query 138 ACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGT----TAGCTAACCCCATCA 193 | ||||||| || ||||||| ||| || | | | || || || || Sbjct 21154 AAGGCCGCCTTTAACCGGGGTTTCCGTCGACATCAAATAGTAGTATATTAAATTATCTCT 21213 Query 194 ATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTT-CGTGTTT--GC 250 |||||| |||||||||||||| |||||| |||||| | | ||| | | ||| || Sbjct 21214 GTTAACCAGCCGGCACCGGGCAGATATCACACTCTATACTTAGATTTTTCATCTTTCAGC 21273 Query 251 AGAGTGCTGTGTTTTTAATAAACAGTCG 278 ||||||||||||||| | |||||||||| Sbjct 21274 AGAGTGCTGTGTTTTAATTAAACAGTCG 21301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260508729984