Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30]
23,102 sequences; 53,344,113 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq46 98.7 3e-18
>seq46
Length=85326
Score = 98.7 bits (108), Expect = 3e-18
Identities = 149/208 (72%), Gaps = 8/208 (4%)
Strand=Plus/Plus
Query 78 ATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTT 137
|||| |||| | | | | ||| | | ||||| ||||||||||||||||||| | | |||
Sbjct 21095 ATTCATGCAAGACCGCATTTAACGGCCAAGGCATTTCGCTACCTTAGGACCCTCAC-GTT 21153
Query 138 ACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGT----TAGCTAACCCCATCA 193
| ||||||| || ||||||| ||| || | | | || || || ||
Sbjct 21154 AAGGCCGCCTTTAACCGGGGTTTCCGTCGACATCAAATAGTAGTATATTAAATTATCTCT 21213
Query 194 ATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTT-CGTGTTT--GC 250
|||||| |||||||||||||| |||||| |||||| | | ||| | | ||| ||
Sbjct 21214 GTTAACCAGCCGGCACCGGGCAGATATCACACTCTATACTTAGATTTTTCATCTTTCAGC 21273
Query 251 AGAGTGCTGTGTTTTTAATAAACAGTCG 278
||||||||||||||| | ||||||||||
Sbjct 21274 AGAGTGCTGTGTTTTAATTAAACAGTCG 21301
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1260508729984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |