Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq387 259 8e-67 seq910 159 6e-37 >seq387 Length=34204 Score = 259 bits (286), Expect = 8e-67 Identities = 179/199 (90%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 5815 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGC 5873 Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | ||| || | || |||||||||||||||||||||||||||||||||||| |||| Sbjct 5874 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 5932 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 || ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 5933 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 5992 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| |||||||||| Sbjct 5993 AAAGAGCTCTCAATCTGTC 6011 Score = 104 bits (114), Expect = 4e-20 Identities = 59/60 (98%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5346 TACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 5405 >seq910 Length=17186 Score = 159 bits (176), Expect = 6e-37 Identities = 154/194 (79%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||||||||| ||| ||||||| ||| ||| |||| ||||||| ||||||||||| || Sbjct 3667 ACCTGTTATTACCTTAAACTTCTATTAGCTT-AAGCTAATAGTCTCTCTAAGAAGCTGGC 3725 Query 121 CACCAACCATAGTCGATGG-GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | || | || | || |||||||||| |||||||||||| ||| |||| |||| Sbjct 3726 GTACTACTAAAG-CAATATAGGCTATTTAGTAGGTTAAGGTCTTGTTTATTATTACAATT 3784 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 || || |||||||||| ||| |||||||||| ||||||||| |||||| ||| ||| ||| Sbjct 3785 AAGCAAACAAATCACTTCACTAACTAAGAACAGCCATGCACTACCACCTATAAAATTAAG 3844 Query 240 AAAGAGCTATCAAT 253 ||| |||| | ||| Sbjct 3845 AAAAAGCTCTTAAT 3858 Score = 150 bits (166), Expect = 3e-34 Identities = 150/193 (78%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||| ||||| ||| ||||||| ||| ||| |||| ||||||| ||||||||||| ||| Sbjct 13310 ACCTATTATTACCTTAAACTTCTATTAGCTT-AAGCTAATAGTCTCTCTAAGAAGCTAGC 13368 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | || | ||| |||||||||||| |||||||||| ||| |||| ||||| Sbjct 13369 GTACTACTAAAGTAATATAGGCTATTTAGCAAGTTAAGGTCTTGTTTATTATTATAATTA 13428 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||||||||||||| ||| ||||||||| || || |||||| ||| ||| ||| |||| Sbjct 13429 AGCAGACAAATCACTTCACTAACTAAGAATAGCTATACACCACTACCTATAAAATTAAGA 13488 Query 241 AAGAGCTATCAAT 253 || |||| | ||| Sbjct 13489 AAAAGCTCTTAAT 13501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796621675662