Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30]
23,102 sequences; 53,344,113 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq387 259 8e-67
seq910 159 6e-37
>seq387
Length=34204
Score = 259 bits (286), Expect = 8e-67
Identities = 179/199 (90%), Gaps = 3/199 (2%)
Strand=Plus/Plus
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| ||
Sbjct 5815 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGC 5873
Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| ||| || | || |||||||||||||||||||||||||||||||||||| ||||
Sbjct 5874 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 5932
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
|| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 5933 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 5992
Query 240 AAAGAGCTATCAATCTGTC 258
|||||||| ||||||||||
Sbjct 5993 AAAGAGCTCTCAATCTGTC 6011
Score = 104 bits (114), Expect = 4e-20
Identities = 59/60 (98%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5346 TACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 5405
>seq910
Length=17186
Score = 159 bits (176), Expect = 6e-37
Identities = 154/194 (79%), Gaps = 3/194 (2%)
Strand=Plus/Plus
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
|||||||||| ||| ||||||| ||| ||| |||| ||||||| ||||||||||| ||
Sbjct 3667 ACCTGTTATTACCTTAAACTTCTATTAGCTT-AAGCTAATAGTCTCTCTAAGAAGCTGGC 3725
Query 121 CACCAACCATAGTCGATGG-GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| || | || | || |||||||||| |||||||||||| ||| |||| ||||
Sbjct 3726 GTACTACTAAAG-CAATATAGGCTATTTAGTAGGTTAAGGTCTTGTTTATTATTACAATT 3784
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
|| || |||||||||| ||| |||||||||| ||||||||| |||||| ||| ||| |||
Sbjct 3785 AAGCAAACAAATCACTTCACTAACTAAGAACAGCCATGCACTACCACCTATAAAATTAAG 3844
Query 240 AAAGAGCTATCAAT 253
||| |||| | |||
Sbjct 3845 AAAAAGCTCTTAAT 3858
Score = 150 bits (166), Expect = 3e-34
Identities = 150/193 (78%), Gaps = 1/193 (1%)
Strand=Plus/Plus
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
|||| ||||| ||| ||||||| ||| ||| |||| ||||||| ||||||||||| |||
Sbjct 13310 ACCTATTATTACCTTAAACTTCTATTAGCTT-AAGCTAATAGTCTCTCTAAGAAGCTAGC 13368
Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180
| || | ||| |||||||||||| |||||||||| ||| |||| |||||
Sbjct 13369 GTACTACTAAAGTAATATAGGCTATTTAGCAAGTTAAGGTCTTGTTTATTATTATAATTA 13428
Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240
| ||||||||||||| ||| ||||||||| || || |||||| ||| ||| ||| ||||
Sbjct 13429 AGCAGACAAATCACTTCACTAACTAAGAATAGCTATACACCACTACCTATAAAATTAAGA 13488
Query 241 AAGAGCTATCAAT 253
|| |||| | |||
Sbjct 13489 AAAAGCTCTTAAT 13501
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796621675662
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |