Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq387 199 7e-49 seq1548 140 6e-31 seq6404 120 5e-25 seq16583 118 2e-24 seq910 109 9e-22 seq8069 82.4 1e-13 >seq387 Length=34204 Score = 199 bits (220), Expect = 7e-49 Identities = 113/115 (98%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1164 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 1223 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206 |||||||||||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct 1224 ATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTT 1278 Score = 156 bits (172), Expect = 7e-36 Identities = 88/89 (99%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGA 266 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1756 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATGTCGAGGGACTAAAGGATCGA 1815 Query 267 TAGGCCACACTTTCATGGTTTGTATTCAC 295 ||||||||||||||||||||||||||||| Sbjct 1816 TAGGCCACACTTTCATGGTTTGTATTCAC 1844 Score = 140 bits (154), Expect = 6e-31 Identities = 87/92 (95%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| |||||||||||| || || |||||||||||||||||||||||||||||||| Sbjct 692 TACTAAGCTGAATTACCATTGCGGTGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 750 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||||||||||||||||||||||||||||| Sbjct 751 CGACGGTCTAAACCCAGCTCACGTTCCCTATT 782 >seq1548 Length=6803 Score = 140 bits (154), Expect = 6e-31 Identities = 100/115 (87%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||| |||||| |||| ||||||||| |||||||||| |||| ||||||||||| | Sbjct 156 TAGTAGGTGAATAATCTAACGCTTACTAAATTCTGCTTTAGTATAATAGGAAGAGCTAAT 215 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206 || |||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 216 ATTAAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCCGCCACAAGCTAGTT 270 >seq6404 Length=482 Score = 120 bits (132), Expect = 5e-25 Identities = 80/89 (90%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGA 266 |||| ||||||||||||| |||||| ||||||| ||||| | ||||||||||||||||| Sbjct 334 ATCCTTGTGGTAACTTTTATGGCACGTCTAGCCGCAAATGTAGAGGGACTAAAGGATCGT 275 Query 267 TAGGCCACACTTTCATGGTTTGTATTCAC 295 ||||| ||||||||| ||||||||||||| Sbjct 274 TAGGCTACACTTTCAGGGTTTGTATTCAC 246 >seq16583 Length=250 Score = 118 bits (130), Expect = 2e-24 Identities = 82/92 (89%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| || ||||||||| || || ||||||||||||| |||||||||||||||||| Sbjct 48 TACTAAGCTGACTTACCATTGCGGTGA-GGTCATCAGTAGGATAAAACTAACCTGTCTCA 106 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 | ||||||||||||||| |||||||||| || Sbjct 107 CGCCGGTCTAAACCCAGCCCACGTTCCCTCTT 138 >seq910 Length=17186 Score = 109 bits (120), Expect = 9e-22 Identities = 80/92 (87%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| ||||||||||| || | ||| || ||||||||||||||||||||||| | Sbjct 8185 TACTAAGCTAAATTACCATTGTGGTAA-GGTTATTAGTAGGGTAAAACTAACCTGTCTTA 8243 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||| ||||||||| ||||||||||||||||| Sbjct 8244 CGACAGTCTAAACCTAGCTCACGTTCCCTATT 8275 Score = 105 bits (116), Expect = 1e-20 Identities = 78/91 (86%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 205 TTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATC 264 |||||||| | ||||||||||| ||||||||||||| |||| | |||||||||||||| Sbjct 9246 TTATCCCTATAGTAACTTTTCTAGCACCTCTAGCCTTAAATATTAAGGGACTAAAGGATT 9305 Query 265 GATAGGCCACACTTTCATGGTTTGTATTCAC 295 ||| |||||||||| || |||| ||||||| Sbjct 9306 AATAAGCCACACTTTTATAGTTTATATTCAC 9336 Score = 96.9 bits (106), Expect = 6e-18 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||| || || |||| || |||||| ||||| ||||| |||| ||| ||||||| | Sbjct 8655 TTAGTAAGTAAATAATCTAATGCTTACTGAATTTTGCTTTAGTATAATAAGAAGAGCTAA 8714 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206 ||| |||||| |||||||||||| |||| ||||||| ||| | | |||| |||| Sbjct 8715 CATTAAAGGATTAAAAAGCAACGTTACTATAAACGCTTAGCTACTATAAGCTAGTT 8770 >seq8069 Length=428 Score = 82.4 bits (90), Expect = 1e-13 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||||||| |||| | ||||||||||| || |||||||||| |||||||||||||||| Sbjct 334 GTCATCAGTTGGGTTATACTAACCTGTCACACGACGGTCTAATTCCAGCTCACGTTCCCT 275 Query 90 ATT 92 ||| Sbjct 274 ATT 272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854202616512