Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30]
23,102 sequences; 53,344,113 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq387 199 7e-49
seq1548 140 6e-31
seq6404 120 5e-25
seq16583 118 2e-24
seq910 109 9e-22
seq8069 82.4 1e-13
>seq387
Length=34204
Score = 199 bits (220), Expect = 7e-49
Identities = 113/115 (98%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 1223
Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1224 ATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTT 1278
Score = 156 bits (172), Expect = 7e-36
Identities = 88/89 (99%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGA 266
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1756 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATGTCGAGGGACTAAAGGATCGA 1815
Query 267 TAGGCCACACTTTCATGGTTTGTATTCAC 295
|||||||||||||||||||||||||||||
Sbjct 1816 TAGGCCACACTTTCATGGTTTGTATTCAC 1844
Score = 140 bits (154), Expect = 6e-31
Identities = 87/92 (95%), Gaps = 1/92 (1%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| |||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 692 TACTAAGCTGAATTACCATTGCGGTGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 750
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92
|||||||||||||||||||||||||||||||
Sbjct 751 CGACGGTCTAAACCCAGCTCACGTTCCCTATT 782
>seq1548
Length=6803
Score = 140 bits (154), Expect = 6e-31
Identities = 100/115 (87%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151
|||| |||||| |||| ||||||||| |||||||||| |||| ||||||||||| |
Sbjct 156 TAGTAGGTGAATAATCTAACGCTTACTAAATTCTGCTTTAGTATAATAGGAAGAGCTAAT 215
Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206
|| |||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 216 ATTAAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCCGCCACAAGCTAGTT 270
>seq6404
Length=482
Score = 120 bits (132), Expect = 5e-25
Identities = 80/89 (90%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGA 266
|||| ||||||||||||| |||||| ||||||| ||||| | |||||||||||||||||
Sbjct 334 ATCCTTGTGGTAACTTTTATGGCACGTCTAGCCGCAAATGTAGAGGGACTAAAGGATCGT 275
Query 267 TAGGCCACACTTTCATGGTTTGTATTCAC 295
||||| ||||||||| |||||||||||||
Sbjct 274 TAGGCTACACTTTCAGGGTTTGTATTCAC 246
>seq16583
Length=250
Score = 118 bits (130), Expect = 2e-24
Identities = 82/92 (89%), Gaps = 1/92 (1%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| || ||||||||| || || ||||||||||||| ||||||||||||||||||
Sbjct 48 TACTAAGCTGACTTACCATTGCGGTGA-GGTCATCAGTAGGATAAAACTAACCTGTCTCA 106
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92
| ||||||||||||||| |||||||||| ||
Sbjct 107 CGCCGGTCTAAACCCAGCCCACGTTCCCTCTT 138
>seq910
Length=17186
Score = 109 bits (120), Expect = 9e-22
Identities = 80/92 (87%), Gaps = 1/92 (1%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| ||||||||||| || | ||| || ||||||||||||||||||||||| |
Sbjct 8185 TACTAAGCTAAATTACCATTGTGGTAA-GGTTATTAGTAGGGTAAAACTAACCTGTCTTA 8243
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92
||| ||||||||| |||||||||||||||||
Sbjct 8244 CGACAGTCTAAACCTAGCTCACGTTCCCTATT 8275
Score = 105 bits (116), Expect = 1e-20
Identities = 78/91 (86%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 205 TTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATC 264
|||||||| | ||||||||||| ||||||||||||| |||| | ||||||||||||||
Sbjct 9246 TTATCCCTATAGTAACTTTTCTAGCACCTCTAGCCTTAAATATTAAGGGACTAAAGGATT 9305
Query 265 GATAGGCCACACTTTCATGGTTTGTATTCAC 295
||| |||||||||| || |||| |||||||
Sbjct 9306 AATAAGCCACACTTTTATAGTTTATATTCAC 9336
Score = 96.9 bits (106), Expect = 6e-18
Identities = 91/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||| || || |||| || |||||| ||||| ||||| |||| ||| ||||||| |
Sbjct 8655 TTAGTAAGTAAATAATCTAATGCTTACTGAATTTTGCTTTAGTATAATAAGAAGAGCTAA 8714
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206
||| |||||| |||||||||||| |||| ||||||| ||| | | |||| ||||
Sbjct 8715 CATTAAAGGATTAAAAAGCAACGTTACTATAAACGCTTAGCTACTATAAGCTAGTT 8770
>seq8069
Length=428
Score = 82.4 bits (90), Expect = 1e-13
Identities = 56/63 (89%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89
||||||||| |||| | ||||||||||| || |||||||||| ||||||||||||||||
Sbjct 334 GTCATCAGTTGGGTTATACTAACCTGTCACACGACGGTCTAATTCCAGCTCACGTTCCCT 275
Query 90 ATT 92
|||
Sbjct 274 ATT 272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854202616512
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |