Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30]
23,102 sequences; 53,344,113 total letters
Query= AAMG01001634.1
Length=217
Score E
Sequences producing significant alignments: (Bits) Value
seq387 150 2e-34
seq910 98.7 1e-18
>seq387
Length=34204
Score = 150 bits (166), Expect = 2e-34
Identities = 150/192 (78%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||
Sbjct 6398 CTAGAAACCAACAAAATAGAACCGCGCGTCCTATTTCATTATTCCATGCTAATGTATTCG 6457
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125
|| || |||||| | || |||||||||||| |||| |||||||||||| |||| | ||
Sbjct 6458 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGTTTCCCCGCCA 6517
Query 126 C-ACCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183
| ||| |||| ||||| || ||| || | ||| | || |||||| |||
Sbjct 6518 CGCCCAGTGAAGGGCATGGGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTACACGCG 6577
Query 184 GTGAGGCGGACC 195
||||||||||||
Sbjct 6578 GTGAGGCGGACC 6589
>seq910
Length=17186
Score = 98.7 bits (108), Expect = 1e-18
Identities = 139/192 (72%), Gaps = 4/192 (2%)
Strand=Plus/Plus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
|||||||| || ||||||| ||| |||||||| |||||||| |||||||| ||||
Sbjct 4250 CTAGAAACTAATAAAATAGAATCGCGTGTCCTATTTTATTATTCTATGCTAATATATTTA 4309
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125
|| || || ||| | || |||||||||||| | || ||||||||||| |||| |
Sbjct 4310 AGCATAGGCTTGCCTAGAGCACTCTAATTTTTTTAAAGTAAAAGTCCTATTTCCCTACTA 4369
Query 126 CACCAATGAA--GGCATACGGGCTCACCA-AGAGGTAGGGCTGGGTAATGCAGTACTCGC 182
| || | || |||||| ||| || | || | ||| || | || ||||| |||
Sbjct 4370 CGCCTAGTAAAGGGCATA-GGGTTCTATAGAGGGAAAGGCCTAGCTAGACTAGTACACGC 4428
Query 183 CGTGAGGCGGAC 194
|||||||||||
Sbjct 4429 GGTGAGGCGGAC 4440
Score = 89.7 bits (98), Expect = 6e-16
Identities = 88/114 (77%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
|||||||| || |||||| | |||||||| |||||||| |||||||| ||||
Sbjct 13893 CTAGAAACTAATAAAATAAAACTATATGTCCTATTTTATTATTCTATGCTAATATATTTA 13952
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC 119
|| || |||||| | || |||||||||||| | || ||||||||||| ||||
Sbjct 13953 AGCATAGGCCTGCCTAGAGCACTCTAATTTTTTTAAAGTAAAAGTCCTATTTCC 14006
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595066793868
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |