Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq387 150 2e-34 seq910 98.7 1e-18 >seq387 Length=34204 Score = 150 bits (166), Expect = 2e-34 Identities = 150/192 (78%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||| Sbjct 6398 CTAGAAACCAACAAAATAGAACCGCGCGTCCTATTTCATTATTCCATGCTAATGTATTCG 6457 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||| | || |||||||||||| |||| |||||||||||| |||| | || Sbjct 6458 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGTTTCCCCGCCA 6517 Query 126 C-ACCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 | ||| |||| ||||| || ||| || | ||| | || |||||| ||| Sbjct 6518 CGCCCAGTGAAGGGCATGGGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTACACGCG 6577 Query 184 GTGAGGCGGACC 195 |||||||||||| Sbjct 6578 GTGAGGCGGACC 6589 >seq910 Length=17186 Score = 98.7 bits (108), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || ||||||| ||| |||||||| |||||||| |||||||| |||| Sbjct 4250 CTAGAAACTAATAAAATAGAATCGCGTGTCCTATTTTATTATTCTATGCTAATATATTTA 4309 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || || ||| | || |||||||||||| | || ||||||||||| |||| | Sbjct 4310 AGCATAGGCTTGCCTAGAGCACTCTAATTTTTTTAAAGTAAAAGTCCTATTTCCCTACTA 4369 Query 126 CACCAATGAA--GGCATACGGGCTCACCA-AGAGGTAGGGCTGGGTAATGCAGTACTCGC 182 | || | || |||||| ||| || | || | ||| || | || ||||| ||| Sbjct 4370 CGCCTAGTAAAGGGCATA-GGGTTCTATAGAGGGAAAGGCCTAGCTAGACTAGTACACGC 4428 Query 183 CGTGAGGCGGAC 194 ||||||||||| Sbjct 4429 GGTGAGGCGGAC 4440 Score = 89.7 bits (98), Expect = 6e-16 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||| || |||||| | |||||||| |||||||| |||||||| |||| Sbjct 13893 CTAGAAACTAATAAAATAAAACTATATGTCCTATTTTATTATTCTATGCTAATATATTTA 13952 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC 119 || || |||||| | || |||||||||||| | || ||||||||||| |||| Sbjct 13953 AGCATAGGCCTGCCTAGAGCACTCTAATTTTTTTAAAGTAAAAGTCCTATTTCC 14006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595066793868