Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq387 260 1e-67 seq910 179 4e-43 >seq387 Length=34204 Score = 260 bits (288), Expect = 1e-67 Identities = 173/191 (91%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||||||||||||||||| | || | |||||||| |||||||||| Sbjct 6511 GGAAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 6452 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| ||||||||||| ||||||||| ||||||||||||||| |||||||||||||| Sbjct 6451 CATTAGCATGGAATAATGAAATAGGACGCGCGGTTCTATTTTGTTGGTTTCTAGGACCG- 6393 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||| ||||||||| ||||||||||||||||| ||||||||||| Sbjct 6392 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 6333 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 6332 TTGGATTTATT 6322 >seq910 Length=17186 Score = 179 bits (198), Expect = 4e-43 Identities = 155/191 (81%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||| |||||||||||| | || | ||| |||| |||| |||| Sbjct 4363 GGAAATAGGACTTTTACTTTAAAAAAATTAGAGTGCTCTAGGCAAGCCTATGCTTAAATA 4304 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| ||| |||||||| |||||||| ||| ||||||||| | |||||||||||| Sbjct 4303 TATTAGCATAGAATAATAAAATAGGACACGCGATTCTATTTTATTAGTTTCTAGGACC-A 4245 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 ||||||| || |||| ||||||| |||| | |||||| |||| | | ||||||||||| Sbjct 4244 CCGTAATAATTAATAGGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTGAAATTC 4185 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 4184 TTAGATTTATT 4174 Score = 165 bits (182), Expect = 8e-39 Identities = 152/191 (80%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||| |||||||||||| | || | |||||||| |||| |||| Sbjct 14006 GGAAATAGGACTTTTACTTTAAAAAAATTAGAGTGCTCTAGGCAGGCCTATGCTTAAATA 13947 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| ||| |||||||| |||||||| | ||| |||||| | |||||||||| | Sbjct 13946 TATTAGCATAGAATAATAAAATAGGACATATAGTTTTATTTTATTAGTTTCTAGGA-CTA 13888 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | |||| || |||| ||||||| ||||| | |||||| |||| | | ||||||||||| Sbjct 13887 CTATAATAATTAATAAGGATAGTTAGGGGTATTAGTATTTAATTATTAGAGGTGAAATTC 13828 Query 181 TTGGATTTATT 191 || |||||||| Sbjct 13827 TTAGATTTATT 13817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511885414080