Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30]
23,102 sequences; 53,344,113 total letters
Query= AAMG01001884.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq387 260 1e-67
seq910 179 4e-43
>seq387
Length=34204
Score = 260 bits (288), Expect = 1e-67
Identities = 173/191 (91%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| |||||||||||||||||||||||||||| | || | |||||||| ||||||||||
Sbjct 6511 GGAAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 6452
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
||||| ||||||||||| ||||||||| ||||||||||||||| ||||||||||||||
Sbjct 6451 CATTAGCATGGAATAATGAAATAGGACGCGCGGTTCTATTTTGTTGGTTTCTAGGACCG- 6393
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
|||||||||| |||| ||| ||||||||| ||||||||||||||||| |||||||||||
Sbjct 6392 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 6333
Query 181 TTGGATTTATT 191
|||||||||||
Sbjct 6332 TTGGATTTATT 6322
>seq910
Length=17186
Score = 179 bits (198), Expect = 4e-43
Identities = 155/191 (81%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| |||||||||||||| |||||||||||| | || | ||| |||| |||| ||||
Sbjct 4363 GGAAATAGGACTTTTACTTTAAAAAAATTAGAGTGCTCTAGGCAAGCCTATGCTTAAATA 4304
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
|||| ||| |||||||| |||||||| ||| ||||||||| | ||||||||||||
Sbjct 4303 TATTAGCATAGAATAATAAAATAGGACACGCGATTCTATTTTATTAGTTTCTAGGACC-A 4245
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
||||||| || |||| ||||||| |||| | |||||| |||| | | |||||||||||
Sbjct 4244 CCGTAATAATTAATAGGGATAGTTAGGGGCATTAGTATTTAATTATTAGAGGTGAAATTC 4185
Query 181 TTGGATTTATT 191
|| ||||||||
Sbjct 4184 TTAGATTTATT 4174
Score = 165 bits (182), Expect = 8e-39
Identities = 152/191 (80%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| |||||||||||||| |||||||||||| | || | |||||||| |||| ||||
Sbjct 14006 GGAAATAGGACTTTTACTTTAAAAAAATTAGAGTGCTCTAGGCAGGCCTATGCTTAAATA 13947
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
|||| ||| |||||||| |||||||| | ||| |||||| | |||||||||| |
Sbjct 13946 TATTAGCATAGAATAATAAAATAGGACATATAGTTTTATTTTATTAGTTTCTAGGA-CTA 13888
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
| |||| || |||| ||||||| ||||| | |||||| |||| | | |||||||||||
Sbjct 13887 CTATAATAATTAATAAGGATAGTTAGGGGTATTAGTATTTAATTATTAGAGGTGAAATTC 13828
Query 181 TTGGATTTATT 191
|| ||||||||
Sbjct 13827 TTAGATTTATT 13817
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511885414080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |