Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq387 300 3e-79 seq910 147 4e-33 >seq387 Length=34204 Score = 300 bits (332), Expect = 3e-79 Identities = 190/203 (94%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 5405 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTA 5346 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 | || |||||||||||||| | ||||||||||||||||||| |||||||||||||||||| Sbjct 5345 C-TC-CCTTGGCCGGAAGGCCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAG 5288 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||| Sbjct 5287 CATTGCAATTATTGCTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGT 5228 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||||||| Sbjct 5227 TGATTACGTCCCTGCCCTTTGTA 5205 Score = 150 bits (166), Expect = 3e-34 Identities = 97/106 (92%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | |||||||| | |||||||||||||| Sbjct 5920 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCCGGCTTCTTAG 5861 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5860 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 5815 >seq910 Length=17186 Score = 147 bits (162), Expect = 4e-33 Identities = 153/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||| |||| ||| || | ||||||||| | ||||| | |||| | || Sbjct 3253 ATGCCCTTAGATATTCTAGGCTATACACACGCTACACTAATAGAGCTAGTGAGTAC-TC- 3196 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| || ||||| || ||||||||| |||||||| || | || ||||||||| |||| Sbjct 3195 CCTTAGCTAGAAGGCCTAGGTAATCTTATTAAACTCCGTTATACTAGGGATAGAGTATTG 3136 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||||||||| || || ||| |||||||||||| || || ||| |||| ||| Sbjct 3135 TAATTATTGCTCTTTAATAAGAAATCCCTAGTAAGCGCAAGTTATTAGCTTACGTTAATT 3076 Query 311 ACGTCCCTGCCCTTTGTA 328 | ||||| |||||| || Sbjct 3075 ATATCCCTACCCTTTATA 3058 Score = 120 bits (132), Expect = 6e-25 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 || ||||||||| |||| ||| | ||||||| ||| || |||| | ||| | || Sbjct 12896 ATACCCTTAGATATTCTAGGCTATATACGCGCTATACTAACGGAGCTAGTAAGTAC-TC- 12839 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| || ||||| || ||||||||| ||||||||| | | || ||||||||| ||| Sbjct 12838 CCTTAGCTAGAAGGCCTAGGTAATCTTATTAAACTCTATTATACTAGGGATAGAGTATTA 12779 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| ||||| || || ||| ||||||||||| || || ||| ||| ||| Sbjct 12778 TAATTATTACTCTTTAATAAGAAATCCCTAGTAAGCGTAAGTTATTAGCTTATGTTAATT 12719 Query 311 ACGTCCCTGCCCTTTGTA 328 |||| | |||||||| || Sbjct 12718 ACGTTCTTGCCCTTTATA 12701 Score = 84.2 bits (92), Expect = 4e-14 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84 |||||||||||| |||||||||| ||||| | | |||| ||||||||||| || Sbjct 3767 AGACCTTAACCTACTAAATAGCCTATATTGCTTTAGTAGTACGCCAGCTTCTTAGAGAGA 3708 Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 |||| ||| |||| || ||||||| ||| |||||||||| Sbjct 3707 CTATTAGCTTAAGCTAATAGAAGTTTAAGGTAATAACAGGT 3667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946981177856