Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30]
23,102 sequences; 53,344,113 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq387 300 3e-79
seq910 147 4e-33
>seq387
Length=34204
Score = 300 bits (332), Expect = 3e-79
Identities = 190/203 (94%), Gaps = 2/203 (1%)
Strand=Plus/Minus
Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 5405 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTA 5346
Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245
| || |||||||||||||| | ||||||||||||||||||| ||||||||||||||||||
Sbjct 5345 C-TC-CCTTGGCCGGAAGGCCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAG 5288
Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305
|||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||
Sbjct 5287 CATTGCAATTATTGCTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGT 5228
Query 306 TGATTACGTCCCTGCCCTTTGTA 328
|||||||||||||||||||||||
Sbjct 5227 TGATTACGTCCCTGCCCTTTGTA 5205
Score = 150 bits (166), Expect = 3e-34
Identities = 97/106 (92%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||||||||| | |||||||| | ||||||||||||||
Sbjct 5920 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCCGGCTTCTTAG 5861
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5860 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 5815
>seq910
Length=17186
Score = 147 bits (162), Expect = 4e-33
Identities = 153/198 (77%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||| |||| ||| || | ||||||||| | ||||| | |||| | ||
Sbjct 3253 ATGCCCTTAGATATTCTAGGCTATACACACGCTACACTAATAGAGCTAGTGAGTAC-TC- 3196
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
|||| || ||||| || ||||||||| |||||||| || | || ||||||||| ||||
Sbjct 3195 CCTTAGCTAGAAGGCCTAGGTAATCTTATTAAACTCCGTTATACTAGGGATAGAGTATTG 3136
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
||||||||||||| || || ||| |||||||||||| || || ||| |||| |||
Sbjct 3135 TAATTATTGCTCTTTAATAAGAAATCCCTAGTAAGCGCAAGTTATTAGCTTACGTTAATT 3076
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||| |||||| ||
Sbjct 3075 ATATCCCTACCCTTTATA 3058
Score = 120 bits (132), Expect = 6e-25
Identities = 147/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|| ||||||||| |||| ||| | ||||||| ||| || |||| | ||| | ||
Sbjct 12896 ATACCCTTAGATATTCTAGGCTATATACGCGCTATACTAACGGAGCTAGTAAGTAC-TC- 12839
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
|||| || ||||| || ||||||||| ||||||||| | | || ||||||||| |||
Sbjct 12838 CCTTAGCTAGAAGGCCTAGGTAATCTTATTAAACTCTATTATACTAGGGATAGAGTATTA 12779
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
||||||| ||||| || || ||| ||||||||||| || || ||| ||| |||
Sbjct 12778 TAATTATTACTCTTTAATAAGAAATCCCTAGTAAGCGTAAGTTATTAGCTTATGTTAATT 12719
Query 311 ACGTCCCTGCCCTTTGTA 328
|||| | |||||||| ||
Sbjct 12718 ACGTTCTTGCCCTTTATA 12701
Score = 84.2 bits (92), Expect = 4e-14
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 25 AGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGGGA 84
|||||||||||| |||||||||| ||||| | | |||| ||||||||||| ||
Sbjct 3767 AGACCTTAACCTACTAAATAGCCTATATTGCTTTAGTAGTACGCCAGCTTCTTAGAGAGA 3708
Query 85 CTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125
|||| ||| |||| || ||||||| ||| ||||||||||
Sbjct 3707 CTATTAGCTTAAGCTAATAGAAGTTTAAGGTAATAACAGGT 3667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 946981177856
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |