Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq387 789 0.0 seq11009 468 2e-129 seq910 385 2e-104 seq6404 266 1e-68 >seq387 Length=34204 Score = 789 bits (874), Expect = 0.0 Identities = 498/537 (93%), Gaps = 5/537 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || || |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1876 CTTTTGTTCCACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 1935 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 1936 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 1995 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 ||||||||||||||||||| |||||| ||| | || |||| |||||||||||| Sbjct 1996 GGCCCGCGAAGGACCTTAAAACCAGAAGTTGGACAA--AAATCCAGCCCCGCTTCATTGA 2053 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| ||| | ||||||||||||||| |||||||| |||||||| || Sbjct 2054 ATAAGTAAAAAAACAATAGGAGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 2110 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 ||||||||||| | ||| |||||||| ||| ||||||||||||||||||||||||||| Sbjct 2111 TTCTACACCTCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 2170 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2171 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 2230 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2231 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 2290 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2291 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACT 2350 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2351 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 2407 >seq11009 Length=352 Score = 468 bits (518), Expect = 2e-129 Identities = 273/282 (97%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 262 GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTC 321 ||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 5 GTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTC 64 Query 322 CGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATC 381 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 65 TGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATC 124 Query 382 TCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 125 TCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 184 Query 442 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCA 501 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 185 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTTTGACATTCA 244 Query 502 GAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 |||||||||||||||||||||||||| ||||| | ||||||| Sbjct 245 GAGCACTGGGCAGAAATCACATTGCGGCAACACCCCTTTCTG 286 >seq910 Length=17186 Score = 385 bits (426), Expect = 2e-104 Identities = 409/537 (76%), Gaps = 7/537 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| ||||| ||||||| | ||||| || || |||||||||||||||| |||||| Sbjct 9368 CTTTTATTCTACTAGAGATTTTTATTCTCTATAAGCCCCCCTTAGGACACCTACGTTATA 9427 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||| | || ||| ||| ||| ||||||| |||| | ||| || | |||| | | Sbjct 9428 GTTTAATAAATATGCTACCCTAGCTAAACTCCTTACCTAATAATATCTTTAACCTAGGTT 9487 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACC-AGTTCCGCTTCATTG 185 ||| ||||||||||| | |||| | | | | || | | || ||| ||| Sbjct 9488 AGCCTATAAAGGACCTTAAAACTAGAA---GTTAGATAAAAATCTAGCCTTACTTTATTA 9544 Query 186 ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTT 245 | ||||||||||||| ||| | ||||| |||||| ||| || | || ||||| || | Sbjct 9545 AATAAGTAAAAAAACAATAGGAGTAGTAGTATTTTACTAGCACTAAA---GCTCCTACCT 9601 Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 |||||||||||| | || ||| | || || |||||||| ||||| || ||||| || Sbjct 9602 ATTCTACACCTCCTATATCTTTTTATAATGTTAAACTAGAGTTAAGCTTAATAGGGTTTT 9661 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 |||||| || |||| | ||||| ||||||| ||| | |||| ||||||||||| || Sbjct 9662 CTTTCCTTACTAATTCTACTAAGCCTATTCCCTTAGCTATAGTTTTGCTAGATAGTAAAT 9721 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 ||||| ||| ||||||| ||||||| ||| || |||| ||||||||||| | |||||| Sbjct 9722 AGGGATAGTAGGAATCTTGTTAATCTATTTATATGCGTTACTAATTAGATAATAAGGCAT 9781 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485 || |||||||||||||||| ||||||||||| ||| |||||| ||||| ||| |||| | Sbjct 9782 TTAGCTACCTTAAGAGAGTTATAGTTACTCCTGCCATTTACCTACGCTTAGTTAAATTAC 9841 Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542 || ||||| ||||| |||||||| || |||||| ||||| || |||| |||||||| Sbjct 9842 TTTACTTTAACATTTAGAGCACTAGGTAGAAATTACATTATGTTAACACCACTTTCT 9898 Score = 293 bits (324), Expect = 8e-77 Identities = 218/255 (85%), Gaps = 0/255 (0%) Strand=Plus/Plus Query 289 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGT 348 ||||| || ||||| ||||||||||||||||| || ||||| ||||||| ||| |||| Sbjct 1 AAGCTTAATAGGGTTTTCTTTCCCCGCTGATTTTGCTAAGCCTATTCCCTTAGCTATGGT 60 Query 349 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 408 || ||||||||||||||||||| ||||||||||| |||||| ||| || |||| |||| Sbjct 61 TTTGCTAGATAGTAGATAGGGATAGTGGGAATCTTGTTAATTTATTTATATGCGTTACTA 120 Query 409 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCC 468 ||||||| | ||| |||| |||||||||||||||| ||||||||||| || ||||||| Sbjct 121 ATTAGATAATAAGGTATTTAGCTACCTTAAGAGAGTTATAGTTACTCCTGCTGTTTACCT 180 Query 469 GCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGT 528 |||||||||| |||| ||||||||||| ||| |||||||| |||||||||||||||| || Sbjct 181 GCGCTTGGTTAAATTACTTCACTTTGATATTTAGAGCACTAGGCAGAAATCACATTGTGT 240 Query 529 CAACATCACTTTCTG 543 |||| |||||||| Sbjct 241 TAACACTACTTTCTG 255 >seq6404 Length=482 Score = 266 bits (294), Expect = 1e-68 Identities = 183/206 (89%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || || |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 214 CTTTTGTTCCACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 155 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 154 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 95 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 ||||||||||||||||||| |||||| ||| | || |||| |||||||||||| Sbjct 94 GGCCCGCGAAGGACCTTAAAACCAGAAGTTGGAC--AAAAATCCAGCCCCGCTTCATTGA 37 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGT 212 ||||||||||||| ||| | ||||| Sbjct 36 ATAAGTAAAAAAACAATAGGAGTAGT 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634822236096