Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30]
23,102 sequences; 53,344,113 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq387 789 0.0
seq11009 468 2e-129
seq910 385 2e-104
seq6404 266 1e-68
>seq387
Length=34204
Score = 789 bits (874), Expect = 0.0
Identities = 498/537 (93%), Gaps = 5/537 (1%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| || || |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1876 CTTTTGTTCCACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 1935
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1936 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 1995
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
||||||||||||||||||| |||||| ||| | || |||| ||||||||||||
Sbjct 1996 GGCCCGCGAAGGACCTTAAAACCAGAAGTTGGACAA--AAATCCAGCCCCGCTTCATTGA 2053
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
||||||||||||| ||| | ||||||||||||||| |||||||| |||||||| ||
Sbjct 2054 ATAAGTAAAAAAACAATAGGAGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 2110
Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306
||||||||||| | ||| |||||||| ||| |||||||||||||||||||||||||||
Sbjct 2111 TTCTACACCTCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 2170
Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2171 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 2230
Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2231 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 2290
Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2291 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACT 2350
Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2351 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 2407
>seq11009
Length=352
Score = 468 bits (518), Expect = 2e-129
Identities = 273/282 (97%), Gaps = 0/282 (0%)
Strand=Plus/Plus
Query 262 GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTC 321
||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 5 GTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTC 64
Query 322 CGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATC 381
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 TGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATC 124
Query 382 TCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 TCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 184
Query 442 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCA 501
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 185 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACTTCACTTTGACATTCA 244
Query 502 GAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
|||||||||||||||||||||||||| ||||| | |||||||
Sbjct 245 GAGCACTGGGCAGAAATCACATTGCGGCAACACCCCTTTCTG 286
>seq910
Length=17186
Score = 385 bits (426), Expect = 2e-104
Identities = 409/537 (76%), Gaps = 7/537 (1%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||||| ||||| ||||||| | ||||| || || |||||||||||||||| ||||||
Sbjct 9368 CTTTTATTCTACTAGAGATTTTTATTCTCTATAAGCCCCCCTTAGGACACCTACGTTATA 9427
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||| | || ||| ||| ||| ||||||| |||| | ||| || | |||| | |
Sbjct 9428 GTTTAATAAATATGCTACCCTAGCTAAACTCCTTACCTAATAATATCTTTAACCTAGGTT 9487
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACC-AGTTCCGCTTCATTG 185
||| ||||||||||| | |||| | | | | || | | || ||| |||
Sbjct 9488 AGCCTATAAAGGACCTTAAAACTAGAA---GTTAGATAAAAATCTAGCCTTACTTTATTA 9544
Query 186 ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTT 245
| ||||||||||||| ||| | ||||| |||||| ||| || | || ||||| || |
Sbjct 9545 AATAAGTAAAAAAACAATAGGAGTAGTAGTATTTTACTAGCACTAAA---GCTCCTACCT 9601
Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305
|||||||||||| | || ||| | || || |||||||| ||||| || ||||| ||
Sbjct 9602 ATTCTACACCTCCTATATCTTTTTATAATGTTAAACTAGAGTTAAGCTTAATAGGGTTTT 9661
Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365
|||||| || |||| | ||||| ||||||| ||| | |||| ||||||||||| ||
Sbjct 9662 CTTTCCTTACTAATTCTACTAAGCCTATTCCCTTAGCTATAGTTTTGCTAGATAGTAAAT 9721
Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425
||||| ||| ||||||| ||||||| ||| || |||| ||||||||||| | ||||||
Sbjct 9722 AGGGATAGTAGGAATCTTGTTAATCTATTTATATGCGTTACTAATTAGATAATAAGGCAT 9781
Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485
|| |||||||||||||||| ||||||||||| ||| |||||| ||||| ||| |||| |
Sbjct 9782 TTAGCTACCTTAAGAGAGTTATAGTTACTCCTGCCATTTACCTACGCTTAGTTAAATTAC 9841
Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542
|| ||||| ||||| |||||||| || |||||| ||||| || |||| ||||||||
Sbjct 9842 TTTACTTTAACATTTAGAGCACTAGGTAGAAATTACATTATGTTAACACCACTTTCT 9898
Score = 293 bits (324), Expect = 8e-77
Identities = 218/255 (85%), Gaps = 0/255 (0%)
Strand=Plus/Plus
Query 289 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGT 348
||||| || ||||| ||||||||||||||||| || ||||| ||||||| ||| ||||
Sbjct 1 AAGCTTAATAGGGTTTTCTTTCCCCGCTGATTTTGCTAAGCCTATTCCCTTAGCTATGGT 60
Query 349 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 408
|| ||||||||||||||||||| ||||||||||| |||||| ||| || |||| ||||
Sbjct 61 TTTGCTAGATAGTAGATAGGGATAGTGGGAATCTTGTTAATTTATTTATATGCGTTACTA 120
Query 409 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCC 468
||||||| | ||| |||| |||||||||||||||| ||||||||||| || |||||||
Sbjct 121 ATTAGATAATAAGGTATTTAGCTACCTTAAGAGAGTTATAGTTACTCCTGCTGTTTACCT 180
Query 469 GCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGT 528
|||||||||| |||| ||||||||||| ||| |||||||| |||||||||||||||| ||
Sbjct 181 GCGCTTGGTTAAATTACTTCACTTTGATATTTAGAGCACTAGGCAGAAATCACATTGTGT 240
Query 529 CAACATCACTTTCTG 543
|||| ||||||||
Sbjct 241 TAACACTACTTTCTG 255
>seq6404
Length=482
Score = 266 bits (294), Expect = 1e-68
Identities = 183/206 (89%), Gaps = 2/206 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| || || |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 214 CTTTTGTTCCACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 155
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 154 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 95
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
||||||||||||||||||| |||||| ||| | || |||| ||||||||||||
Sbjct 94 GGCCCGCGAAGGACCTTAAAACCAGAAGTTGGAC--AAAAATCCAGCCCCGCTTCATTGA 37
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGT 212
||||||||||||| ||| | |||||
Sbjct 36 ATAAGTAAAAAAACAATAGGAGTAGT 11
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1634822236096
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |