Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq387 232 1e-58 seq910 105 1e-20 seq9830 91.5 2e-16 >seq387 Length=34204 Score = 232 bits (256), Expect = 1e-58 Identities = 226/280 (81%), Gaps = 11/280 (4%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||||||||||||| |||| |||||| Sbjct 694 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 637 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 636 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 577 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| |||||| | | || |||| | || ||| | ||||||||| |||| | Sbjct 576 GAACGCGGTGATAC-CGCCCGCACGTAC-AGATGGACAAGAATAGGCTCCGGCTTAGCGT 519 Query 181 CTTAGCAGGCCGGCAACGGGCGTCC-CGC-GGAAGCGCGGGGCGCTCAGCTGGCGGATTG 238 |||||||||| | | | | ||| ||||||||| | | | | | ||| |||| Sbjct 518 CTTAGCAGGCG---ATCTCTCCACAGCGCAGGAAGCGCGTCGTGGT-ATTTCGCGAATTG 463 Query 239 CAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||||||| || | || ||| ||||||||||||||||||| Sbjct 462 TAATTTCAACACGAGC-GGGTTAAATCCTTTGCAGACGAC 424 >seq910 Length=17186 Score = 105 bits (116), Expect = 1e-20 Identities = 97/120 (81%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65 |||| |||||| |||| ||| ||||| |||||| ||||| ||| || ||| ||||| Sbjct 8182 AGAGAAACCGCT-AATTTAGA-TAATTAGTTTTTACGGCTATCTAACTAGGTAGTGCTAT 8125 Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125 ||||||| ||||||| ||| || ||| ||||||||||||| |||||| |||| |||||| Sbjct 8124 AAAGCTACTATCTGCTAGATAATAGCTAAACGCCTCTAAGTTAGAATCTATGCTAGAACG 8065 >seq9830 Length=383 Score = 91.5 bits (100), Expect = 2e-16 Identities = 85/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 19 AATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCT 78 |||| ||| ||||| |||||| ||| ||| || ||| ||||| ||||||| |||| Sbjct 1 AATTTAGA-TAATTAGTTTTTATAGCTATCTAACTAGGTAGTGCTATAAAGCTACTATCT 59 Query 79 GCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125 ||| ||| || ||| ||||||||||||| |||||| |||| |||||| Sbjct 60 GCTAGATAATAGCTAAACGCCTCTAAGTTAGAATCTATGCTAGAACG 106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819016662528