Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30]
23,102 sequences; 53,344,113 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq387 232 1e-58
seq910 105 1e-20
seq9830 91.5 2e-16
>seq387
Length=34204
Score = 232 bits (256), Expect = 1e-58
Identities = 226/280 (81%), Gaps = 11/280 (4%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || |||||| ||||||||||||||||||||| |||| ||||||
Sbjct 694 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 637
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 636 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 577
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||| |||||| | | || |||| | || ||| | ||||||||| |||| |
Sbjct 576 GAACGCGGTGATAC-CGCCCGCACGTAC-AGATGGACAAGAATAGGCTCCGGCTTAGCGT 519
Query 181 CTTAGCAGGCCGGCAACGGGCGTCC-CGC-GGAAGCGCGGGGCGCTCAGCTGGCGGATTG 238
|||||||||| | | | | ||| ||||||||| | | | | | ||| ||||
Sbjct 518 CTTAGCAGGCG---ATCTCTCCACAGCGCAGGAAGCGCGTCGTGGT-ATTTCGCGAATTG 463
Query 239 CAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
||||||| || | || ||| |||||||||||||||||||
Sbjct 462 TAATTTCAACACGAGC-GGGTTAAATCCTTTGCAGACGAC 424
>seq910
Length=17186
Score = 105 bits (116), Expect = 1e-20
Identities = 97/120 (81%), Gaps = 2/120 (2%)
Strand=Plus/Minus
Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65
|||| |||||| |||| ||| ||||| |||||| ||||| ||| || ||| |||||
Sbjct 8182 AGAGAAACCGCT-AATTTAGA-TAATTAGTTTTTACGGCTATCTAACTAGGTAGTGCTAT 8125
Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125
||||||| ||||||| ||| || ||| ||||||||||||| |||||| |||| ||||||
Sbjct 8124 AAAGCTACTATCTGCTAGATAATAGCTAAACGCCTCTAAGTTAGAATCTATGCTAGAACG 8065
>seq9830
Length=383
Score = 91.5 bits (100), Expect = 2e-16
Identities = 85/107 (79%), Gaps = 1/107 (1%)
Strand=Plus/Plus
Query 19 AATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCT 78
|||| ||| ||||| |||||| ||| ||| || ||| ||||| ||||||| ||||
Sbjct 1 AATTTAGA-TAATTAGTTTTTATAGCTATCTAACTAGGTAGTGCTATAAAGCTACTATCT 59
Query 79 GCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125
||| ||| || ||| ||||||||||||| |||||| |||| ||||||
Sbjct 60 GCTAGATAATAGCTAAACGCCTCTAAGTTAGAATCTATGCTAGAACG 106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819016662528
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |