Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq387 740 0.0 seq910 378 2e-102 seq11453 340 5e-91 >seq387 Length=34204 Score = 740 bits (820), Expect = 0.0 Identities = 468/504 (93%), Gaps = 2/504 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 6725 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCGGTATTTATTGTCACTACCT 6784 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 6785 CCCCGAATCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 6844 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| | Sbjct 6845 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGCAACCATGTTT 6904 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||||||| || | |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 6905 GGCCACTACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCG 6964 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| ||||||||||||||||||| |||||| | ||||| ||||| Sbjct 6965 CAAGGCCATGCGATTCGAGAAGTTATTATGAATCACCAGAGAGCCCAG-AGGGCATTGGT 7023 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 |||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 7024 TTTTAATCTAATAAATACATCCCTTCCGAAGTCGGGATTTTTAGCATGTATTAGCTCTAG 7083 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||| Sbjct 7084 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTTATATAATGA 7143 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 7144 GCCATTCGCAGTTTCGCTGTATA-ATTGTTTATACTTAGACATGCATGGCTTAATCTTTG 7202 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 7203 AGACAAGCATATGACTACTGGCAG 7226 >seq910 Length=17186 Score = 378 bits (418), Expect = 2e-102 Identities = 384/498 (77%), Gaps = 2/498 (0%) Strand=Plus/Plus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||| |||| |||||||||||| ||||||||||| ||| ||||||||||||||||||||| Sbjct 4578 TACTTATTCTAATTACAAGACCTAAAAGAGCCCTATATTAGTATTTATTGTCACTACCTC 4637 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || | | ||| ||||||||||| || | ||||||||||| ||| | ||||| |||| Sbjct 4638 CCTAAATTAGAATTAGGTAATTTGCGTGCTTACTGCCTTCCTTAGATATAGTAGCTGTTT 4697 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 || |||||| |||| | | | |||||| | ||||| ||| || ||| | Sbjct 4698 CTTAGGCTCTTTCTCTAGGGTTAAGCCCTAACCCTTTATTACCTATTGTAACTATGTTTA 4757 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||| | | || |||||| |||||| |||||||| ||| ||| || | || Sbjct 4758 GCTACTACCTAAATATTAAAAGTTAATAGGGAAGAAATTTAAATAAACTATTACTAGCGT 4817 Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301 ||||| ||| |||| |||||||||| |||||| | |||| | ||||| || ||| Sbjct 4818 AAGGCTATGTGATTTAAGAAGTTATTATAAATCACTAGAGAGCTTAG-AGGGCATTAGTT 4876 Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361 ||| |||||||||||| | |||||| |||| || ||||||||||||||||||| |||| Sbjct 4877 TTTAATCTAATAAATATATCCCTTCTAAAGTTAGGATTTTTAGCATGTATTAGCTTTAGA 4936 Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421 ||||| | |||||| | ||||||||||||||| ||||||| |||||| || |||| || Sbjct 4937 ATTACTATAGTTATCTAAGTAGTAAGGTACTATTAAATAAATAATAACTTATATAATAAG 4996 Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481 | ||| ||||| || |||| ||| |||||||||||| || ||| ||||||||||| | Sbjct 4997 CTATTTATAGTTTTGCTATATA-ATTACTTATACTTAGATATACATAGCTTAATCTTTAA 5055 Query 482 GACAAGCATATGACTACT 499 || |||||||| |||||| Sbjct 5056 GATAAGCATATAACTACT 5073 Score = 318 bits (352), Expect = 2e-84 Identities = 371/498 (74%), Gaps = 2/498 (0%) Strand=Plus/Plus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||| |||| |||||||| ||| ||||||||||| ||| |||||||||| | |||||||| Sbjct 14221 TACTTATTCTAATTACAAAACCTAAAAGAGCCCTATATTAGTATTTATTATTACTACCTC 14280 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 | | ||||| |||||||| | ||| | || |||||||| ||| | ||||| ||| Sbjct 14281 CTTAAATTAGGATTAGGTAATTTACACGCTTACTACCTTCCTTAGATATAGTAGCTATTT 14340 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 || |||||| |||| | | | |||||| || | ||||| || || || | Sbjct 14341 CTTAGGCTCTTTCTCTAGGGTTAAGCCCTAACTCTCTGTTACTTATTATAACTATATTTA 14400 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||| | | || |||||| ||| || | |||||| ||| ||| || | | Sbjct 14401 GCTACTACCTAAATATTAAAAGTTAATAAGGAAAAAATTTAAATAAACTATTACTAGTAT 14460 Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301 ||||| ||| ||| |||||||||| ||| || | ||||| || ||| |||||| Sbjct 14461 AAGGCTATGTAATTTAAGAAGTTATTATAAATTACTAGAGAGCCTAGA-GGGTATTGGTT 14519 Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361 ||| |||||||||||| | || ||| |||| || |||||||||| |||||||| |||| Sbjct 14520 TTTAATCTAATAAATATATCCTTTCTAAAGTTAGGATTTTTAGCATATATTAGCTTTAGA 14579 Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421 ||||| | |||||| | ||||||||||||||| ||||||| |||||| || |||| || Sbjct 14580 ATTACTATAGTTATCTAAGTAGTAAGGTACTATTAAATAAATAATAACTTATATAATAAG 14639 Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481 | ||| ||||| || |||| ||| |||||||||||| || ||| ||||||||||| | Sbjct 14640 CTATTTATAGTTTTGCTATATA-ATTACTTATACTTAGATATACATAGCTTAATCTTTAA 14698 Query 482 GACAAGCATATGACTACT 499 || |||||||| | |||| Sbjct 14699 GATAAGCATATAATTACT 14716 >seq11453 Length=340 Score = 340 bits (376), Expect = 5e-91 Identities = 278/335 (83%), Gaps = 2/335 (1%) Strand=Plus/Plus Query 157 CCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 ||||||||||||| ||| | | |||| ||| || | ||||| | |||||||||| ||| Sbjct 6 CCGTTACCCGTTGCAACCGTCTTTGGCCCCTACCCAAACATCGCACGTTGATAGGGAAGA 65 Query 217 AATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCAC 276 |||||||||||||||| ||||| ||||||||||||| ||| |||| || | ||||||| Sbjct 66 CATTTGAATGAACCATCACCGGCACAAGGCCATGCGACTCGAGAAGTCATGACGAATCAC 125 Query 277 CAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGG 336 || ||| | || || | |||| |||| |||||||||| ||| ||||||||||||||| Sbjct 126 CAGACAGCACAGACGG-CATTGGGTTTTAATCTAATAAAAACAACCCTTCCGAAGTCGGC 184 Query 337 GTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCA 396 || ||||| | |||||| |||||||||||||||||| ||| |||||| |||||||||| Sbjct 185 AGTTGTAGCACGAATTAGCCCTAGAATTACCACGGTTACCCAAGTAGTAGGGTACTATCA 244 Query 397 AATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACT 456 ||||||| |||||| || |||||||||||||| || || ||||||| ||||||||||| Sbjct 245 AATAAACTATAACTTATACAATGAGCCATTCGCTGTATCGCTGTATA-CTTGCTTATACT 303 Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGCATA 491 |||||||||| || ||||||||||| |||||||| Sbjct 304 TAGACATGCAACGCCTAATCTTTGAGCCAAGCATA 338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510051067392