Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30]
23,102 sequences; 53,344,113 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq387 740 0.0
seq910 378 2e-102
seq11453 340 5e-91
>seq387
Length=34204
Score = 740 bits (820), Expect = 0.0
Identities = 468/504 (93%), Gaps = 2/504 (0%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 6725 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCGGTATTTATTGTCACTACCT 6784
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 6785 CCCCGAATCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 6844
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| |
Sbjct 6845 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGCAACCATGTTT 6904
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
|||||||| || | |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 6905 GGCCACTACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCG 6964
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
||||||||||||||||| ||||||||||||||||||| |||||| | ||||| |||||
Sbjct 6965 CAAGGCCATGCGATTCGAGAAGTTATTATGAATCACCAGAGAGCCCAG-AGGGCATTGGT 7023
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
|||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 7024 TTTTAATCTAATAAATACATCCCTTCCGAAGTCGGGATTTTTAGCATGTATTAGCTCTAG 7083
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||
Sbjct 7084 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTTATATAATGA 7143
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480
||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 7144 GCCATTCGCAGTTTCGCTGTATA-ATTGTTTATACTTAGACATGCATGGCTTAATCTTTG 7202
Query 481 AGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||
Sbjct 7203 AGACAAGCATATGACTACTGGCAG 7226
>seq910
Length=17186
Score = 378 bits (418), Expect = 2e-102
Identities = 384/498 (77%), Gaps = 2/498 (0%)
Strand=Plus/Plus
Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||| |||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||
Sbjct 4578 TACTTATTCTAATTACAAGACCTAAAAGAGCCCTATATTAGTATTTATTGTCACTACCTC 4637
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
|| | | ||| ||||||||||| || | ||||||||||| ||| | ||||| ||||
Sbjct 4638 CCTAAATTAGAATTAGGTAATTTGCGTGCTTACTGCCTTCCTTAGATATAGTAGCTGTTT 4697
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
|| |||||| |||| | | | |||||| | ||||| ||| || ||| |
Sbjct 4698 CTTAGGCTCTTTCTCTAGGGTTAAGCCCTAACCCTTTATTACCTATTGTAACTATGTTTA 4757
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241
|| |||| | | || |||||| |||||| |||||||| ||| ||| || | ||
Sbjct 4758 GCTACTACCTAAATATTAAAAGTTAATAGGGAAGAAATTTAAATAAACTATTACTAGCGT 4817
Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301
||||| ||| |||| |||||||||| |||||| | |||| | ||||| || |||
Sbjct 4818 AAGGCTATGTGATTTAAGAAGTTATTATAAATCACTAGAGAGCTTAG-AGGGCATTAGTT 4876
Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361
||| |||||||||||| | |||||| |||| || ||||||||||||||||||| ||||
Sbjct 4877 TTTAATCTAATAAATATATCCCTTCTAAAGTTAGGATTTTTAGCATGTATTAGCTTTAGA 4936
Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421
||||| | |||||| | ||||||||||||||| ||||||| |||||| || |||| ||
Sbjct 4937 ATTACTATAGTTATCTAAGTAGTAAGGTACTATTAAATAAATAATAACTTATATAATAAG 4996
Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481
| ||| ||||| || |||| ||| |||||||||||| || ||| ||||||||||| |
Sbjct 4997 CTATTTATAGTTTTGCTATATA-ATTACTTATACTTAGATATACATAGCTTAATCTTTAA 5055
Query 482 GACAAGCATATGACTACT 499
|| |||||||| ||||||
Sbjct 5056 GATAAGCATATAACTACT 5073
Score = 318 bits (352), Expect = 2e-84
Identities = 371/498 (74%), Gaps = 2/498 (0%)
Strand=Plus/Plus
Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||| |||| |||||||| ||| ||||||||||| ||| |||||||||| | ||||||||
Sbjct 14221 TACTTATTCTAATTACAAAACCTAAAAGAGCCCTATATTAGTATTTATTATTACTACCTC 14280
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
| | ||||| |||||||| | ||| | || |||||||| ||| | ||||| |||
Sbjct 14281 CTTAAATTAGGATTAGGTAATTTACACGCTTACTACCTTCCTTAGATATAGTAGCTATTT 14340
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
|| |||||| |||| | | | |||||| || | ||||| || || || |
Sbjct 14341 CTTAGGCTCTTTCTCTAGGGTTAAGCCCTAACTCTCTGTTACTTATTATAACTATATTTA 14400
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241
|| |||| | | || |||||| ||| || | |||||| ||| ||| || | |
Sbjct 14401 GCTACTACCTAAATATTAAAAGTTAATAAGGAAAAAATTTAAATAAACTATTACTAGTAT 14460
Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301
||||| ||| ||| |||||||||| ||| || | ||||| || ||| ||||||
Sbjct 14461 AAGGCTATGTAATTTAAGAAGTTATTATAAATTACTAGAGAGCCTAGA-GGGTATTGGTT 14519
Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361
||| |||||||||||| | || ||| |||| || |||||||||| |||||||| ||||
Sbjct 14520 TTTAATCTAATAAATATATCCTTTCTAAAGTTAGGATTTTTAGCATATATTAGCTTTAGA 14579
Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421
||||| | |||||| | ||||||||||||||| ||||||| |||||| || |||| ||
Sbjct 14580 ATTACTATAGTTATCTAAGTAGTAAGGTACTATTAAATAAATAATAACTTATATAATAAG 14639
Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481
| ||| ||||| || |||| ||| |||||||||||| || ||| ||||||||||| |
Sbjct 14640 CTATTTATAGTTTTGCTATATA-ATTACTTATACTTAGATATACATAGCTTAATCTTTAA 14698
Query 482 GACAAGCATATGACTACT 499
|| |||||||| | ||||
Sbjct 14699 GATAAGCATATAATTACT 14716
>seq11453
Length=340
Score = 340 bits (376), Expect = 5e-91
Identities = 278/335 (83%), Gaps = 2/335 (1%)
Strand=Plus/Plus
Query 157 CCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216
||||||||||||| ||| | | |||| ||| || | ||||| | |||||||||| |||
Sbjct 6 CCGTTACCCGTTGCAACCGTCTTTGGCCCCTACCCAAACATCGCACGTTGATAGGGAAGA 65
Query 217 AATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCAC 276
|||||||||||||||| ||||| ||||||||||||| ||| |||| || | |||||||
Sbjct 66 CATTTGAATGAACCATCACCGGCACAAGGCCATGCGACTCGAGAAGTCATGACGAATCAC 125
Query 277 CAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGG 336
|| ||| | || || | |||| |||| |||||||||| ||| |||||||||||||||
Sbjct 126 CAGACAGCACAGACGG-CATTGGGTTTTAATCTAATAAAAACAACCCTTCCGAAGTCGGC 184
Query 337 GTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCA 396
|| ||||| | |||||| |||||||||||||||||| ||| |||||| ||||||||||
Sbjct 185 AGTTGTAGCACGAATTAGCCCTAGAATTACCACGGTTACCCAAGTAGTAGGGTACTATCA 244
Query 397 AATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACT 456
||||||| |||||| || |||||||||||||| || || ||||||| |||||||||||
Sbjct 245 AATAAACTATAACTTATACAATGAGCCATTCGCTGTATCGCTGTATA-CTTGCTTATACT 303
Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGCATA 491
|||||||||| || ||||||||||| ||||||||
Sbjct 304 TAGACATGCAACGCCTAATCTTTGAGCCAAGCATA 338
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510051067392
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |