Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq2746 89.7 2e-12 seq757 86.0 2e-11 >seq2746 Length=1222 Score = 89.7 bits (98), Expect = 2e-12 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 364425 CAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGT 364484 |||| ||||| || |||||||||| | | ||||||||||||||||| ||| | || | Sbjct 886 CAATCGTCATTCGCGAGGGAATGGCGTGTGGGTTGATGATGATGTCTGGCGTGACACCTT 945 Query 364485 CAGCGGTAAAGGGCATATCTTC-GGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCA 364543 | ||||| ||||| || || | || | | ||| |||||| || ||||||||| | Sbjct 946 CCCGAGTAAACGGCATGTCCTCTTGTCGGTAAG-TGACACCAATAGTGCCCTTTTGCCCG 1004 Query 364544 TAGCGAGAAGCAAACTTGTCGCCAAT 364569 | ||||| || |||||||| ||||| Sbjct 1005 TGACGAGAGGCGAACTTGTCTCCAAT 1030 >seq757 Length=21213 Score = 86.0 bits (94), Expect = 2e-11 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 364425 CAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGT 364484 |||| ||||| || |||||||||| | | ||||||||||||||||| ||| | || | Sbjct 337 CAATTGTCATTCGCGAGGGAATGGCGTGTGGGTTGATGATGATGTCTGGCGTGACACCTT 278 Query 364485 CAGCGGTAAAGGGCATAT-CTTCGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCA 364543 | ||||| ||||| | || | | || | | ||| |||||| || ||||||||| | Sbjct 277 CCCGAGTAAACGGCATGTCCTCCTGTCGGTAAG-TGACACCAATAGTGCCCTTTTGCCCG 219 Query 364544 TAGCGAGAAGCAAACTTGTCGCCAAT 364569 | ||||| || || ||||| ||||| Sbjct 218 TGACGAGAGGCGAATTTGTCTCCAAT 193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884328484228086