Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq6 271 1e-70 seq3 165 1e-38 >seq6 Length=1473139 Score = 271 bits (300), Expect = 1e-70 Identities = 200/229 (87%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| ||| |||||| |||||||||||| ||| | Sbjct 832861 GTACAAAGGGCAGGGACGTAATCAACGCATGCT-GATGACATGCGCTTACTAGGCATT-C 832918 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | ||| | |||||| Sbjct 832919 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGAGTTTAACAAGATT 832978 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| |||||||||||| |||||||| | ||||||||||||||||||| Sbjct 832979 ACCCAGACCTTCCGGCCAAGGTGAATAACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCG 833038 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 833039 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 833087 Score = 271 bits (300), Expect = 1e-70 Identities = 200/229 (87%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| ||| |||||| |||||||||||| ||| | Sbjct 841143 GTACAAAGGGCAGGGACGTAATCAACGCATGCT-GATGACATGCGCTTACTAGGCATT-C 841200 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | ||| | |||||| Sbjct 841201 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGAGTTTAACAAGATT 841260 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| |||||||||||| |||||||| | ||||||||||||||||||| Sbjct 841261 ACCCAGACCTTCCGGCCAAGGTGAATAACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCG 841320 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841321 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 841369 >seq3 Length=2655511 Score = 165 bits (182), Expect = 1e-38 Identities = 153/189 (81%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||| | |||||||| ||| |||||| ||||||||||| ||| | Sbjct 1501513 GTACAAAGGGCAGGGACGCAATCAACGCGTGCT-GATGACATACGCTTACTAGGCATT-C 1501456 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| ||| |||||| || |||||| ||| ||||| ||| | || ||| Sbjct 1501455 CTCGTTGAAGAGCAATAAT-GCAATGCGCTGTCCCCAGCACTATGAAGTTTAACAATATT 1501397 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| |||||||||||| ||||| || | ||||||| ||||||||||| Sbjct 1501396 ACCCCGACCTTCCGGCCAAGGTGACTAACTCGCTGTCTCGGTCAGTGTGGCGCGCGTGCG 1501337 Query 180 GCCCAGAAC 188 ||||||| Sbjct 1501336 ATCCAGAAC 1501328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751998346305