Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01]
227 sequences; 34,744,152 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq6 502 5e-140
seq4 168 1e-39
>seq6
Length=1473139
Score = 502 bits (556), Expect = 5e-140
Identities = 303/318 (95%), Gaps = 1/318 (0%)
Strand=Plus/Minus
Query 1 TACTTGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCG 60
|||||| ||||||||||||||||||||||| || || |||||||||||||||||||| |
Sbjct 833823 TACTTG-TCCGGCCGGGCCTTTCCTTCTGGAGAACCTCATGCCCTTCACTGGGTGTGTTG 833765
Query 61 GGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAAT 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833764 GGGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAAT 833705
Query 121 ACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG 180
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 833704 ACGTTAGCATGGAATAATAGAATAGGACGTGCGGTCCTATTTTGTTGGTTTCTAGGACCG 833645
Query 181 CCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTC 240
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 833644 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 833585
Query 241 TTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 833584 TTGGATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA 833525
Query 301 GTGAACGAAAGTTAGGGG 318
||||||||||||||||||
Sbjct 833524 GTGAACGAAAGTTAGGGG 833507
Score = 502 bits (556), Expect = 5e-140
Identities = 303/318 (95%), Gaps = 1/318 (0%)
Strand=Plus/Minus
Query 1 TACTTGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCG 60
|||||| ||||||||||||||||||||||| || || |||||||||||||||||||| |
Sbjct 842105 TACTTG-TCCGGCCGGGCCTTTCCTTCTGGAGAACCTCATGCCCTTCACTGGGTGTGTTG 842047
Query 61 GGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAAT 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842046 GGGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAAT 841987
Query 121 ACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG 180
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 841986 ACGTTAGCATGGAATAATAGAATAGGACGTGCGGTCCTATTTTGTTGGTTTCTAGGACCG 841927
Query 181 CCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTC 240
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 841926 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 841867
Query 241 TTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 841866 TTGGATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA 841807
Query 301 GTGAACGAAAGTTAGGGG 318
||||||||||||||||||
Sbjct 841806 GTGAACGAAAGTTAGGGG 841789
>seq4
Length=1737036
Score = 168 bits (186), Expect = 1e-39
Identities = 120/137 (88%), Gaps = 3/137 (2%)
Strand=Plus/Plus
Query 20 TTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACT 79
|||||||||||||| || |||||||||||||||||||| ||||| |||||||| |||||
Sbjct 964791 TTTCCTTCTGGGGAACCTCATGCCCTTCACTGGGTGTGTTGGGGAACCAGGACTCTTACT 964850
Query 80 TTG---AAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATA 136
||| ||||| ||||||||| ||||||||||||||||||| |||| | |||||||| ||
Sbjct 964851 TTGGAAAAAAAGTTAGAGTGTCCAAAGCAGGCCTTTGCTCGGATACGTCAGCATGGACTA 964910
Query 137 ATAGAATAGGACGTGCG 153
||||||||||||| ||
Sbjct 964911 GTAGAATAGGACGTTCG 964927
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915197922496
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |