Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq6 502 5e-140 seq4 168 1e-39 >seq6 Length=1473139 Score = 502 bits (556), Expect = 5e-140 Identities = 303/318 (95%), Gaps = 1/318 (0%) Strand=Plus/Minus Query 1 TACTTGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCG 60 |||||| ||||||||||||||||||||||| || || |||||||||||||||||||| | Sbjct 833823 TACTTG-TCCGGCCGGGCCTTTCCTTCTGGAGAACCTCATGCCCTTCACTGGGTGTGTTG 833765 Query 61 GGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAAT 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 833764 GGGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAAT 833705 Query 121 ACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG 180 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 833704 ACGTTAGCATGGAATAATAGAATAGGACGTGCGGTCCTATTTTGTTGGTTTCTAGGACCG 833645 Query 181 CCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTC 240 ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 833644 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 833585 Query 241 TTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 833584 TTGGATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA 833525 Query 301 GTGAACGAAAGTTAGGGG 318 |||||||||||||||||| Sbjct 833524 GTGAACGAAAGTTAGGGG 833507 Score = 502 bits (556), Expect = 5e-140 Identities = 303/318 (95%), Gaps = 1/318 (0%) Strand=Plus/Minus Query 1 TACTTGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCG 60 |||||| ||||||||||||||||||||||| || || |||||||||||||||||||| | Sbjct 842105 TACTTG-TCCGGCCGGGCCTTTCCTTCTGGAGAACCTCATGCCCTTCACTGGGTGTGTTG 842047 Query 61 GGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAAT 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 842046 GGGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAAT 841987 Query 121 ACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG 180 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 841986 ACGTTAGCATGGAATAATAGAATAGGACGTGCGGTCCTATTTTGTTGGTTTCTAGGACCG 841927 Query 181 CCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTC 240 ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 841926 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 841867 Query 241 TTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 841866 TTGGATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA 841807 Query 301 GTGAACGAAAGTTAGGGG 318 |||||||||||||||||| Sbjct 841806 GTGAACGAAAGTTAGGGG 841789 >seq4 Length=1737036 Score = 168 bits (186), Expect = 1e-39 Identities = 120/137 (88%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 20 TTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACT 79 |||||||||||||| || |||||||||||||||||||| ||||| |||||||| ||||| Sbjct 964791 TTTCCTTCTGGGGAACCTCATGCCCTTCACTGGGTGTGTTGGGGAACCAGGACTCTTACT 964850 Query 80 TTG---AAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATA 136 ||| ||||| ||||||||| ||||||||||||||||||| |||| | |||||||| || Sbjct 964851 TTGGAAAAAAAGTTAGAGTGTCCAAAGCAGGCCTTTGCTCGGATACGTCAGCATGGACTA 964910 Query 137 ATAGAATAGGACGTGCG 153 ||||||||||||| || Sbjct 964911 GTAGAATAGGACGTTCG 964927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915197922496