Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 7e-18 seq3 73.4 2e-11 >seq6 Length=1473139 Score = 95.1 bits (104), Expect = 7e-18 Identities = 69/76 (91%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||| ||||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 832821 CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 832878 Query 109 TAATACAACGCAAGCT 124 |||| ||||||| ||| Sbjct 832879 TAAT-CAACGCATGCT 832893 Score = 95.1 bits (104), Expect = 7e-18 Identities = 69/76 (91%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||| ||||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 841103 CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 841160 Query 109 TAATACAACGCAAGCT 124 |||| ||||||| ||| Sbjct 841161 TAAT-CAACGCATGCT 841175 >seq3 Length=2655511 Score = 73.4 bits (80), Expect = 2e-11 Identities = 61/71 (86%), Gaps = 3/71 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||| | |||| || ||||||||| ||||| ||||| |||||||||||||||||||| Sbjct 1501553 CTCACTGAATCATT-CAATCGGTAGTA-GCGACAGGCGGTGTGTACAAAGGGCAGGGACG 1501496 Query 109 TAATACAACGC 119 ||| |||||| Sbjct 1501495 CAAT-CAACGC 1501486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300799359860