Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq6 187 3e-45 seq4 96.9 4e-18 >seq6 Length=1473139 Score = 187 bits (206), Expect = 3e-45 Identities = 175/215 (81%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 833650 CTAGAAACCAACAAAATAGGACCGCACGTCCTATTCTATTATTCCATGCTAACGTATTCG 833709 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || | |||||||||||||||||||||||| |||| ||||||||||||||||| | || Sbjct 833710 AGCAAAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGGTTCCCCAACA 833769 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGC-AGTACTCGC 182 || ||| |||| ||||| || || ||| ||| | ||| || | ||||| ||| Sbjct 833770 CACCCAGTGAAGGGCAT-GAGGTTCTCCAGAAGGAAAGGCCCGGCCGGACAAGTACACGC 833828 Query 183 CGTGAGGCGGACCATAGCACCCA-GCCCGAGTTTC 216 |||||||||||| | || ||| |||| |||||| Sbjct 833829 GGTGAGGCGGACC-TGCCAGCCAGGCCCAAGTTTC 833862 Score = 187 bits (206), Expect = 3e-45 Identities = 175/215 (81%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 841932 CTAGAAACCAACAAAATAGGACCGCACGTCCTATTCTATTATTCCATGCTAACGTATTCG 841991 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || | |||||||||||||||||||||||| |||| ||||||||||||||||| | || Sbjct 841992 AGCAAAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGGTTCCCCAACA 842051 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGC-AGTACTCGC 182 || ||| |||| ||||| || || ||| ||| | ||| || | ||||| ||| Sbjct 842052 CACCCAGTGAAGGGCAT-GAGGTTCTCCAGAAGGAAAGGCCCGGCCGGACAAGTACACGC 842110 Query 183 CGTGAGGCGGACCATAGCACCCA-GCCCGAGTTTC 216 |||||||||||| | || ||| |||| |||||| Sbjct 842111 GGTGAGGCGGACC-TGCCAGCCAGGCCCAAGTTTC 842144 >seq4 Length=1737036 Score = 96.9 bits (106), Expect = 4e-18 Identities = 91/114 (80%), Gaps = 4/114 (4%) Strand=Plus/Minus Query 28 CGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTAAGCCTGCTTTGAACAC 87 || ||||||||||||| || |||||||| | |||| || || | |||||||||| |||| Sbjct 964927 CGAACGTCCTATTCTACTAGTCCATGCTGACGTATCCGAGCAAAGGCCTGCTTTGGACAC 964868 Query 88 TCTAA---TTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACA-CCAATGAAGG 137 ||||| |||| ||| |||| |||||||||||| | |||| ||| |||||| Sbjct 964867 TCTAACTTTTTTTCCAAAGTAAGAGTCCTGGTTCCCCAACACACCCAGTGAAGG 964814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595198691118