Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3 242 3e-59 seq19 136 3e-27 >seq3 Length=2655511 Score = 242 bits (268), Expect = 3e-59 Identities = 622/942 (66%), Gaps = 4/942 (0%) Strand=Plus/Minus Query 66001 GGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGAC 66060 |||||| || | || || |||||||||||||| | ||| || || || || || |||| Sbjct 1394662 GGGAAGAGCGACGGAAGCCAGGTTGCAGACAGCGACCTCATCCGGTGCAGTGTATTCGAT 1394603 Query 66061 AATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCG 66120 || || ||||| || || || ||| ||||| || | |||| || || ||||| | Sbjct 1394602 GATCTCAGTGCAGAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTCCT 1394543 Query 66121 ATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGAT 66180 ||| ||||||||||| | |||| | || | || ||||| || | ||||| || Sbjct 1394542 GTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGAAT 1394483 Query 66181 GGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGT-TCGTAAT 66239 ||||| ||| || | || || || | || |||| | || | ||||| | Sbjct 1394482 GGCGTACCAGAGCTTCTGAGCACGGACAGT-CTCACGACCCTTACCAAGCTTCTCGTACT 1394424 Query 66240 GTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTG 66299 ||||| ||| |||| || || | || || | || | || |||| || | Sbjct 1394423 TCTCGTAAAGGGCAACGAACTCATCGCCGTAAACGTCAGCGAGGCCGGGGCACTCGTTGG 1394364 Query 66300 GACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCC 66359 | ||||| || | ||| || || | || | ||||| ||||||| ||||| || |||| Sbjct 1394363 GGCACATGAGAGTCCACTCGCCGTTCTCCTGGACACGCTGCATAAAGAGATCGGGAATCC 1394304 Query 66360 AGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGT 66419 | || ||||||||||||||||| || || |||||| ||||||| || || | || || Sbjct 1394303 ACAGAGCGTAGAAGAGATCGCGAGCACGAACCTCCTCCTTGCCGTGGTTCTTCCTCAGGT 1394244 Query 66420 CGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATAC 66479 ||||||| | |||| ||| || ||||| || || ||||||||||| || | || | Sbjct 1394243 CGAGGAAGCCGAAGACGTCAGCGTGCCACGGCTCGAGGTAGATGGCAAATGCACCAGGGC 1394184 Query 66480 GTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTA 66539 | ||| |||||| |||||||| ||||| || |||||| | ||||| | ||| || | Sbjct 1394183 GCTTGTTGCCACCCTGGTCGACATAGCGGGCAGTGTTGTTGTAAACACGGAGCATGGGAA 1394124 Query 66540 CGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGT 66599 || ||||| ||| | || ||||| || |||| ||| || || || || || Sbjct 1394123 TCAGACCGTTCGATGTTCCGTTGGTTCCTCCGATATAGGAGCCAGTGGCACGAATGCGGT 1394064 Query 66600 GAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCC 66659 | || || || |||||||| || || ||||| ||||| || || | ||| Sbjct 1394063 GGACGTTGAGGCCAATACCGCCAGCAGTCTTGGAGATCAACGCGCATGTCTTGAGTGTGT 1394004 Query 66660 GGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGG 66719 | | || || |||||| ||| |||| ||| | |||| |||| || | || | Sbjct 1394003 CGTAGATACCCTCAATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGTG 1393944 Query 66720 GTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACA 66779 | ||||| | || |||||| || || | ||||| || ||||| | | |||| Sbjct 1393943 GGGACGGTGTACCAGCGTTGAAGAGCGTCGGCGACGCGTGTGTGAAGTACTTCTGCGACA 1393884 Query 66780 TGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGC-ACAT 66838 |||| | ||| |||||||| | || |||| || || || || | || ||| Sbjct 1393883 TGTAGTCGTATGTCTCGATAGCCTTCTCGATGTCCTCCATGTGGATGCCAACAGCGACA- 1393825 Query 66839 CGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAG 66898 ||||| || | || || || || ||| | | | | ||||| | | | || ||| Sbjct 1393824 CGCATGAGCATGTGCTGGGGGCGCTCGGCAACCTTGCCGTTGATGCGGAGCAGATATGAG 1393765 Query 66899 CGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCG 66940 || |||| ||||||| || ||| || ||| ||||| ||| Sbjct 1393764 CGCTCCAATGTCTTGAATCCGAAGAACTGGTAGTTGAAGTCG 1393723 Score = 152 bits (168), Expect = 4e-32 Identities = 342/507 (67%), Gaps = 14/507 (3%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| ||||||||||| | || || ||| |||| | || |||||||| |||||| Sbjct 1395567 TCGACAGTGAACTGGATGGGCGCAGAGGCAGCCATGGTTCGGAGGTAGTACATTCCGGTC 1395508 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATA-ATTCGGCTC 65196 ||||||||| ||| || ||| ||||| |||| | || |||| | | | ||||| Sbjct 1395507 TTGAGGCCAAGCTTCCATCCAGCGAAGTGCATGGATG-TGATCTTGCCCATAGTAGGCTC 1395449 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 || || || |||| |||||| |||||||||| | |||||| || |||||||| Sbjct 1395448 CTTCATGTGGATGTTCAGAGACTGAGACTGATCGATGAAGGCACCACGGTCAGCAGCCAT 1395389 Query 65257 GTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT--ACCTCA 65314 | ||||| ||| ||| || |||||||| |||||||| || || | | ||| Sbjct 1395388 CTGGATGATGGTACGCTGCGAGATTTCCCAGACAGTCTTGTAGAG--AACCTTGATCTCG 1395331 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374 ||||| | ||| ||||| || |||| ||||| ||||| || ||| Sbjct 1395330 TCAGGAATGTTAGGGATGCGCTGGATGGATCCACCCTCGGCAATGATGCGGTTCTTCATG 1395271 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGAT-GTTG---AACCAAGTGACGATTGATGAC 65430 ||| | ||| | ||||| |||| ||| | ||| ||||||| | |||| || Sbjct 1395270 TTCTCGGTCCAGAGACCCATGTCGACAAGGTCCTTGAGCAACCAAG----GGTTGACAAC 1395215 Query 65431 TTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGA 65490 |||||||| || | || |||||||| || ||||| || ||| ||| || ||| | Sbjct 1395214 CTGGAACTCTCCAGCGAGCACACGACGAGAGTAAATGTTCGAGGTGTAGGGCTCGAAGCA 1395155 Query 65491 TTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGA 65550 || ||||||| ||||| || | ||||| || || ||||| || || || | || || Sbjct 1395154 CTCGTTGTTGCCAAGAATCTGCGAGGTAGAGGCTGTAGGCATAGGCGCAACGAGCAGAGA 1395095 Query 65551 GTTTCGCAATCCGTTCATTTCAATGTT 65577 || || | |||| | | |||| || Sbjct 1395094 ATTGCGGACACCGTACTGTGCAATCTT 1395068 >seq19 Length=853957 Score = 136 bits (150), Expect = 3e-27 Identities = 290/429 (68%), Gaps = 17/429 (4%) Strand=Plus/Minus Query 61510 GTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569 || || ||| | || |||||||| ||||| || | ||||| ||| ||||||| ||||| Sbjct 676073 GTTGAAGGTATCTTCTTCAGTGGTTCGTTCGCGTCCATCTTCTGGCTGAAGAAGCGTGGT 676014 Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGT 61629 || ||||||||||| || ||| ||| ||| | || || || |||||||||||||| Sbjct 676013 CTCATGCCCGGTCTCACATTCTCCAACGAGCTCATCTCTCGTGACGAGGGCATGCACACA 675954 Query 61630 GATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAAT---CGTCCGTCGGAGGAGCGT 61686 || |||||| | || || || |||| ||||| || || | ||| | Sbjct 675953 GACTTTGCTTGCCTTCTCTT------CTCTCTGCTGAATAACCGCCCAAGCAAAGAGGCT 675900 Query 61687 GTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTG 61746 || | | || | ||||| || || ||||| ||||| || ||| ||||||| | Sbjct 675899 GTCGCAGCTATCATCACCGAGGCCGTCACAATCGAGCAGGAGTTCCTGTCTGACGCCCT- 675841 Query 61747 CCCGTCT-CACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGC 61805 ||| | | | || |||||||||| || || |||| ||||| || || || || || Sbjct 675840 CCCTTGTGCGCTGCTCGGCATGAACGCCGGCCTCATGTGCCAGTACATCGAGTTCGTCGC 675781 Query 61806 CGACCGTCTGTTGGTCGATTTGGGTA---TGAAGCGGATCTATAATACGAAAAACCCATT 61862 || || || || | | | | || | |||| ||| || | | ||||| || Sbjct 675780 TGATCGCCTACTGTTGGCTCTTGGCAACCCCAAGC---ACTACAACGCTACCAACCCCTT 675724 Query 61863 TGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGG 61922 || |||||||| | || ||||| | ||||||||| || || |||||||| || || || Sbjct 675723 CGACTTCATGGAGAACATCTCGCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGCGTTGG 675664 Query 61923 CGACTATCA 61931 ||||| || Sbjct 675663 TGACTACCA 675655 Score = 127 bits (140), Expect = 2e-24 Identities = 206/293 (70%), Gaps = 5/293 (2%) Strand=Plus/Minus Query 61090 TGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCC 61149 |||| |||||||| ||||| || ||||| |||||||| | || ||| ||||| | ||| Sbjct 676546 TGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAAGAGATCGATCTCTCC 676487 Query 61150 AAAGACATGAATGACTGGGA---GCGTTT-ATCGAGCGGTGAACAACATTTCATTAAACA 61205 || ||||| | |||||| | ||| | | ||| || || | ||||| || Sbjct 676486 AAGGACATCCACGACTGGAACAAGCGCCTCAACGA-CGACGAGCGTTTCTTCATCTCCCA 676428 Query 61206 TGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTT 61265 || | || ||||| || || || || || || ||||| ||||| | | || || || Sbjct 676427 CGTCCTCGCCTTCTTCGCTGCCTCCGATGGCATTGTCAACGAGAACCTTGTCGAGCGCTT 676368 Query 61266 CGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGA 61325 | || ||||| || | | ||||| || || ||||||||||||||||| ||||| Sbjct 676367 CTCGAGCGAGGTACAGATCCCTGAGGCACGATGCTTCTACGGCTTCCAGATCATGATGGA 676308 Query 61326 GAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378 ||| |||||| | |||| ||| | | |||||||| || |||||||| |||| Sbjct 676307 GAACGTCCACGCTGAGACATACTCTCTCCTCATCGACACCTACATCAGCGAGC 676255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566900103280