Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq107 78.8 1e-12 >seq107 Length=32175 Score = 78.8 bits (86), Expect = 1e-12 Identities = 158/227 (70%), Gaps = 13/227 (6%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAG---GCGTCAGTCCGTATACATCGACTTACCGTCTT-CG 57 ||| || |||||| |||||| ||| || || ||||||| || |||| |||| || Sbjct 16392 TTAACCAGCCATCATTGGGCAGATAGCG-CACTC--TATACATTGATTTACA-TCTTACG 16447 Query 58 CACGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGC 117 || | ||||||||| | |||||||||| | | ||| | || || | || Sbjct 16448 CAAAGTGCTGTGTTTTAATTAAACAGTCGTGCAACACCATTTTATGTCTCCTCTTCC--- 16504 Query 118 TCAACACGTCGT--TCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTG 175 | ||| | | ||| || | |||||| |||| |||| |||||||| | ||||||| Sbjct 16505 TAAACTGATATTAATCAGTAGGAATGGCACACCTTTTCCCTCAGTTACGGTGTCATTTTG 16564 Query 176 CCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTAC 222 |||| |||||||| | ||| | | |||||||| ||||||||||| Sbjct 16565 CCGAGTTCCTTAATGATTGTTAGCTCAAACGCCTTCGTATTCTCTAC 16611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694397369743