Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17] 391 sequences; 33,420,179 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq369 829 0.0 seq179 111 5e-22 seq287 82.4 2e-13 >seq369 Length=7588 Score = 829 bits (918), Expect = 0.0 Identities = 487/504 (97%), Gaps = 1/504 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5593 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 5652 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5653 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 5712 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 5713 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAAACCATGGTA 5772 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| || | ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 5773 AGCCAATACCTTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCGTCGCCGGCG 5832 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 |||||||||||||| ||| ||||||| ||||||||||||| ||||||||||||||||||| Sbjct 5833 CAAGGCCATGCGATCCGTGAAGTTATCATGAATCACCAAGAAGCCCCGAAGGGCGTTGGT 5892 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 |||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||| Sbjct 5893 TTTTTATCTAATAAATACACCCCTCCCGAAGTTGGGGTTTTCAGCATGTATTAGCTCTAG 5952 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 5953 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 6012 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 6013 GCCATTCGCAGTTTCACGGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 6071 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 6072 AGACAAGCATATGACTACTGGCAG 6095 >seq179 Length=78782 Score = 111 bits (122), Expect = 5e-22 Identities = 84/99 (85%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 339 TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAA 398 ||| | || |||| ||| |||| |||||| |||| |||| |||||||||||||||||||| Sbjct 52546 TTTCAACACGTATCAGCACTAGTATTACCCCGGTCATCCTTGTAGTAAGGTACTATCAAA 52605 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCAC 437 ||||| | |||||| | || |||||||||| |||||||| Sbjct 52606 TAAACAACAACTGAATCAACGAGCCATTCGTAGTTTCAC 52644 >seq287 Length=224456 Score = 82.4 bits (90), Expect = 2e-13 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 175 ATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCG 234 ||||| | || ||||| | |||||||||||||||||||||| ||||||||||| | | Sbjct 9794 ATGGTGGTTCATCATCCTGCGATCGAAAGTTGATAGGGCAGAAGTTTGAATGAACTACTG 9735 Query 235 CCGGCTCAAGGCCATGCGATTCGTTAAG 262 ||||| ||||| |||| ||| || ||| Sbjct 9734 CCGGCGCAAGGTCATGTGATATGTGAAG 9707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510394094336