Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epicoccum_20sorghinum_20[genbank_20GCA_5F001879705.1_202016-11-17]
391 sequences; 33,420,179 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq369 829 0.0
seq179 111 5e-22
seq287 82.4 2e-13
>seq369
Length=7588
Score = 829 bits (918), Expect = 0.0
Identities = 487/504 (97%), Gaps = 1/504 (0%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5593 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 5652
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5653 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 5712
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 5713 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAAACCATGGTA 5772
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
|||| || | ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 5773 AGCCAATACCTTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCGTCGCCGGCG 5832
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
|||||||||||||| ||| ||||||| ||||||||||||| |||||||||||||||||||
Sbjct 5833 CAAGGCCATGCGATCCGTGAAGTTATCATGAATCACCAAGAAGCCCCGAAGGGCGTTGGT 5892
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
|||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||
Sbjct 5893 TTTTTATCTAATAAATACACCCCTCCCGAAGTTGGGGTTTTCAGCATGTATTAGCTCTAG 5952
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 5953 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 6012
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 6013 GCCATTCGCAGTTTCACGGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 6071
Query 481 AGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||
Sbjct 6072 AGACAAGCATATGACTACTGGCAG 6095
>seq179
Length=78782
Score = 111 bits (122), Expect = 5e-22
Identities = 84/99 (85%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 339 TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAA 398
||| | || |||| ||| |||| |||||| |||| |||| ||||||||||||||||||||
Sbjct 52546 TTTCAACACGTATCAGCACTAGTATTACCCCGGTCATCCTTGTAGTAAGGTACTATCAAA 52605
Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCAC 437
||||| | |||||| | || |||||||||| ||||||||
Sbjct 52606 TAAACAACAACTGAATCAACGAGCCATTCGTAGTTTCAC 52644
>seq287
Length=224456
Score = 82.4 bits (90), Expect = 2e-13
Identities = 71/88 (81%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 175 ATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCG 234
||||| | || ||||| | |||||||||||||||||||||| ||||||||||| | |
Sbjct 9794 ATGGTGGTTCATCATCCTGCGATCGAAAGTTGATAGGGCAGAAGTTTGAATGAACTACTG 9735
Query 235 CCGGCTCAAGGCCATGCGATTCGTTAAG 262
||||| ||||| |||| ||| || |||
Sbjct 9734 CCGGCGCAAGGTCATGTGATATGTGAAG 9707
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510394094336
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |