Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798775.1_202014-12-08] 6,865 sequences; 49,793,988 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq55 812 0.0 seq3374 288 3e-75 seq1121 111 5e-22 >seq55 Length=7917 Score = 812 bits (900), Expect = 0.0 Identities = 505/538 (94%), Gaps = 5/538 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1812 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 1871 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1872 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 1931 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 |||||||||||||||||| || |||| ||| | |||| |||||||||||||||||| Sbjct 1932 AGCCCGCGAAGGACCTTAATGCTAGAAGTTGGGCTGTGACACCCAGTTCCGCTTCATTGA 1991 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| |||| ||||||||||||||||| |||| || |||||||| || Sbjct 1992 ATAAGTAAAAAAACAATAAAGGTAGTGGTATTTCACTGGCGCTGAC---GCTCCCACCTA 2048 Query 247 TTCTACACCTCTCAA-GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 | ||||||| ||| | ||| |||||||| ||| |||||||||||||||||||||||||| Sbjct 2049 TCCTACACC-CTCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTT 2107 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2108 CTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 2167 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2168 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 2227 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2228 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 2287 Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2288 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 2345 >seq3374 Length=17444 Score = 288 bits (318), Expect = 3e-75 Identities = 233/279 (84%), Gaps = 5/279 (2%) Strand=Plus/Plus Query 81 CCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGCGAAGGAC 140 ||| || ||| ||||||||||||||||||||| |||||||||||| |||||| |||||| Sbjct 1202 CCGTCCTAGCATAACTCCCCACCTGACAATGTCCTCAACCCGGATCAGCCCGCAAAGGAC 1261 Query 141 CTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaaaaaaaC 200 ||||| ||||||| | | | |||| | ||||||||||||||| ||||| |||||| Sbjct 1262 CTTAATGCCAGAAGTTTGGCCGTGACACTCGGTTCCGCTTCATTGAATAAGT-CAAAAAC 1320 Query 201 GATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCA 260 |||| ||||||||||||||||| |||| || |||||||| ||||||||||| || Sbjct 1321 CATAAAGGTAGTGGTATTTCACTGGCGCTGA---CGCTCCCACCTATTCTACACCCTGCA 1377 Query 261 AGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATT 320 ||| ||||| | || |||||||||||||||||||||||| ||||||||||||| | Sbjct 1378 TGTCTTTTCA-TTATACGAACTAGAGTCAAGCTCAACAGGGTCGTCTTTCCCCGCTGGTA 1436 Query 321 CCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 | ||||||||||||||||||||||| ||||||||||||| Sbjct 1437 CTGCCAAGCCCGTTCCCTTGGCTGTAGTTTCGCTAGATA 1475 >seq1121 Length=28071 Score = 111 bits (122), Expect = 5e-22 Identities = 67/71 (94%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 326 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 385 ||||| | ||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 8586 AAGCCTGCTCCCTTGGCTGTGGTTTCGTTAGATAGTAGATAGGGACAGTGGGAACCTCGT 8645 Query 386 TAATCCATTCA 396 ||||||||||| Sbjct 8646 TAATCCATTCA 8656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635087743520