Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erysiphe_20necator_20[genbank_20GCA_5F000798795.1_202014-12-08] 6,350 sequences; 49,942,550 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq133 812 0.0 seq3561 288 3e-75 seq1401 111 5e-22 >seq133 Length=7852 Score = 812 bits (900), Expect = 0.0 Identities = 505/538 (94%), Gaps = 5/538 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6041 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 5982 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 5981 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 5922 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 |||||||||||||||||| || |||| ||| | |||| |||||||||||||||||| Sbjct 5921 AGCCCGCGAAGGACCTTAATGCTAGAAGTTGGGCTGTGACACCCAGTTCCGCTTCATTGA 5862 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| |||| ||||||||||||||||| |||| || |||||||| || Sbjct 5861 ATAAGTAAAAAAACAATAAAGGTAGTGGTATTTCACTGGCGCTGAC---GCTCCCACCTA 5805 Query 247 TTCTACACCTCTCAA-GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 | ||||||| ||| | ||| |||||||| ||| |||||||||||||||||||||||||| Sbjct 5804 TCCTACACC-CTCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTT 5746 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 5745 CTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 5686 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5685 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 5626 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5625 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 5566 Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 5565 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 5508 >seq3561 Length=7030 Score = 288 bits (318), Expect = 3e-75 Identities = 233/279 (84%), Gaps = 5/279 (2%) Strand=Plus/Plus Query 81 CCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGCGAAGGAC 140 ||| || ||| ||||||||||||||||||||| |||||||||||| |||||| |||||| Sbjct 1376 CCGTCCTAGCATAACTCCCCACCTGACAATGTCCTCAACCCGGATCAGCCCGCAAAGGAC 1435 Query 141 CTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaaaaaaaC 200 ||||| ||||||| | | | |||| | ||||||||||||||| ||||| |||||| Sbjct 1436 CTTAATGCCAGAAGTTTGGCCGTGACACTCGGTTCCGCTTCATTGAATAAGT-CAAAAAC 1494 Query 201 GATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCA 260 |||| ||||||||||||||||| |||| || |||||||| ||||||||||| || Sbjct 1495 CATAAAGGTAGTGGTATTTCACTGGCGCTGA---TGCTCCCACCTATTCTACACCCTGCA 1551 Query 261 AGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATT 320 ||| ||||| | || |||||||||||||||||||||||| ||||||||||||| | Sbjct 1552 TGTCTTTTCA-TTATACGAACTAGAGTCAAGCTCAACAGGGTCGTCTTTCCCCGCTGGTA 1610 Query 321 CCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 | ||||||||||||||||||||||| ||||||||||||| Sbjct 1611 CTGCCAAGCCCGTTCCCTTGGCTGTAGTTTCGCTAGATA 1649 >seq1401 Length=19648 Score = 111 bits (122), Expect = 5e-22 Identities = 67/71 (94%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 326 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 385 ||||| | ||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 129 AAGCCTGCTCCCTTGGCTGTGGTTTCGTTAGATAGTAGATAGGGACAGTGGGAACCTCGT 188 Query 386 TAATCCATTCA 396 ||||||||||| Sbjct 189 TAATCCATTCA 199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635096164800