Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Escovopsis_20weberi_20[genbank_20GCA_5F001278495.1_202015-09-02] 29 sequences; 27,200,907 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq2 116 2e-20 seq1 93.3 2e-13 >seq2 Length=3830584 Score = 116 bits (128), Expect = 2e-20 Identities = 344/516 (67%), Gaps = 41/516 (8%) Strand=Plus/Minus Query 448659 AGACGCGCTCCATGTCGCCCAATCGGAGCCCGCCGTGTCGCAACTTGCCCTCGGTGGGCT 448718 || |||||||||| || |||| || | ||||||| | | |||||||| |||| Sbjct 2012711 AGTCGCGCTCCATCTCTCCCAGACGCAAACCGCCGTCCCTTGAACGACCCTCGGTCGGCT 2012652 Query 448719 GCCGCGTGAGGAGCGAGTACGGTCCCCTCTGCCGCGTGTGCATCTTCTCCGAGGCCAGTT 448778 | |||||||||| | ||| |||| | |||| ||||||||| ||| ||| | Sbjct 2012651 GGCGCGTGAGGATGGCTCGCGGGCCCCGCGCGCGCGAGTGCATCTTGTCCTGCACCATGT 2012592 Query 448779 GCTTGAGGCTCTGGAAGAAGAAGGGCGCGTAGAACATG--CGGCACGGCATCATCTCGCC 448836 |||| |||| |||| || ||| ||| ||| ||| ||| || | || | |||||| Sbjct 2012591 GCTTCAGGCGCTGGTAGTAGATGGGGCCGTTGAAGATGTACGCCTCGAGGGC--CTCGCC 2012534 Query 448837 CGTCTGGCCGTCCGTAAAGATCGTC-TTGCCCTCGGGCTCGATCATGCCCCTC-TCCTCC 448894 ||| |||| ||| ||| | ||| |||||||| | || | ||| | ||| || Sbjct 2012533 CGTGATGCCGGACGTGAAG-TAGTCCTTGCCCTCC--CAGGAGAA--CCCGTGGTCCACC 2012479 Query 448895 ATGTAGTCCATGAGCTCGGCCACGGAGAGGTCCGAAAAGGCCGTGCCGTCCTGCGGCAAG 448954 | | || ||| || |||||| ||| ||| | || |||| || | ||| Sbjct 2012478 AGGACCTCGCTGACCTGCTCCACGG---GGTGCGATCGGAACG---CGTC--GCCG-AAG 2012428 Query 448955 CCGCTCTCACAGC--CCGTG----ATGG---CCTGG------AGGGCCTCGAGCAACATG 448999 ||| ||| || ||||| |||| ||| | ||| |||||||| | || Sbjct 2012427 CCGTACTCCTTGCGGCCGTGGACGATGGACGCCTTGCCCGTCAGGCACTCGAGCAGCTTG 2012368 Query 449000 GCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGG---CGTCTCG 449056 || ||||| || |||||| | | || ||||||||||||||||| || | | || Sbjct 2012367 CCGACTGTCATTCGGGACGGGAAACCGTGAGGGTTCATGATGATGTCCGGGCACAGCCCG 2012308 Query 449057 CCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGG 449116 | ||||| |||||||||||||| ||| || | | |||| ||||||||| ||| Sbjct 2012307 TTGTCCGCG---AAGGGCATGTCCTCCTGGTCCACGATGATGCCGACGACGCCCTTTTGG 2012251 Query 449117 CCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGGC 449152 ||||||||| |||||||||| ||| |||| ||| Sbjct 2012250 CCGTGGCGGGACGAGAACTTGTCGCCCAGCTCAGGC 2012215 >seq1 Length=5717297 Score = 93.3 bits (102), Expect = 2e-13 Identities = 148/208 (71%), Gaps = 12/208 (6%) Strand=Plus/Minus Query 448981 GAGGGCCTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGAT 449040 ||| | ||||| |||||| || |||||| ||||| ||| |||| |||||||| ||||| Sbjct 4959932 GAGCGACTCGACGAACATGCCGATGGTCATTCGCGAGGGGAAGGCGTGCGGGTTGATGAT 4959873 Query 449041 GATGTCGGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCAC--CAGG 449098 || ||||||| ||| | | || |||||||||||| ||| | | |||| | | Sbjct 4959872 GACGTCGGGCTGGATGCCCGTCTCGGAGAAGGGCATGTCGACGGCG--GGCCACTTCTGC 4959815 Query 449099 CCGTTGACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTC-CCCCTGCTCGGGCTTGCG 449157 | |||||||||||| |||||||| |||||||||| || || | |||| ||| Sbjct 4959814 GAGCAGACGCCCTTCTGCCCGTGGCGCGACGAGAACTTGTCGCCGATGAT-GGGCGAGCG 4959756 Query 449158 TGTGAAGCGCAGCACGATCTTGATGGAG 449185 | || ||| || |||||||||| Sbjct 4959755 CGGGATGCG------GAACTTGATGGAG 4959734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084738406496142