Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq41 217 2e-54 seq3 114 2e-23 seq1 91.5 2e-16 >seq41 Length=38872 Score = 217 bits (240), Expect = 2e-54 Identities = 168/195 (86%), Gaps = 5/195 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 3201 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 3144 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | |||||| Sbjct 3143 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 3084 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||||||| |||| |||| || ||||| || | | ||||||||||||||||||| Sbjct 3083 ACCCGGACCTTTCGGACAAG--GAAGTACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 3026 Query 180 GCCCAGAACATCTAA 194 ||||||||||||||| Sbjct 3025 GCCCAGAACATCTAA 3011 >seq3 Length=1379917 Score = 114 bits (126), Expect = 2e-23 Identities = 130/172 (76%), Gaps = 3/172 (2%) Strand=Plus/Plus Query 58 TTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAG 116 |||||||||||||| ||| || ||||||| ||||||||| ||| || | | ||| | ||| Sbjct 409982 TTCCTCGTTGAAGAGCAATAACTGCAATGCTCTATCCCCTTCATGACGGAGTTTAACAAG 410041 Query 117 ATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176 ||||||||||||| |||| || | | | ||| | | || | || | ||| Sbjct 410042 ATTACCCGGACCTTTCGGGTAAATAGGTCG--CCGTCAAGCCCGCCATTCCAGTGTTCGT 410099 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 || || ||||||| ||||||||| |||||||||||||||| ||||||||| Sbjct 410100 GCTGCTCAGAACACACAAGGGCATCGCAGACCTGTTATTGCCACAAACTTCC 410151 >seq1 Length=4337333 Score = 91.5 bits (100), Expect = 2e-16 Identities = 85/107 (79%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 114 AAGATTACCCGGACCTGTCGGCCAAGGTGATAG--ACTCGTTGAATACATCAGTGTAGCG 171 |||||||||| ||||| | || ||| | || |||| || | |||||| ||| Sbjct 1483144 AAGATTACCCAGACCTTTTGGACAATGAAGTACCTACTCACTGGCTCTGTCAGTGCCGCG 1483203 Query 172 CGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 218 ||||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 1483204 CGCGTGCGGGCCAGAACATCTAAGGGCATCACAGACCTGTTGTTGCC 1483250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751999395345