Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10]
83 sequences; 41,590,745 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq41 217 2e-54
seq3 114 2e-23
seq1 91.5 2e-16
>seq41
Length=38872
Score = 217 bits (240), Expect = 2e-54
Identities = 168/195 (86%), Gaps = 5/195 (3%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| |
Sbjct 3201 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 3144
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | ||||||
Sbjct 3143 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 3084
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||||||| |||| |||| || ||||| || | | |||||||||||||||||||
Sbjct 3083 ACCCGGACCTTTCGGACAAG--GAAGTACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 3026
Query 180 GCCCAGAACATCTAA 194
|||||||||||||||
Sbjct 3025 GCCCAGAACATCTAA 3011
>seq3
Length=1379917
Score = 114 bits (126), Expect = 2e-23
Identities = 130/172 (76%), Gaps = 3/172 (2%)
Strand=Plus/Plus
Query 58 TTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAG 116
|||||||||||||| ||| || ||||||| ||||||||| ||| || | | ||| | |||
Sbjct 409982 TTCCTCGTTGAAGAGCAATAACTGCAATGCTCTATCCCCTTCATGACGGAGTTTAACAAG 410041
Query 117 ATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176
||||||||||||| |||| || | | | ||| | | || | || | |||
Sbjct 410042 ATTACCCGGACCTTTCGGGTAAATAGGTCG--CCGTCAAGCCCGCCATTCCAGTGTTCGT 410099
Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|| || ||||||| ||||||||| |||||||||||||||| |||||||||
Sbjct 410100 GCTGCTCAGAACACACAAGGGCATCGCAGACCTGTTATTGCCACAAACTTCC 410151
>seq1
Length=4337333
Score = 91.5 bits (100), Expect = 2e-16
Identities = 85/107 (79%), Gaps = 2/107 (2%)
Strand=Plus/Plus
Query 114 AAGATTACCCGGACCTGTCGGCCAAGGTGATAG--ACTCGTTGAATACATCAGTGTAGCG 171
|||||||||| ||||| | || ||| | || |||| || | |||||| |||
Sbjct 1483144 AAGATTACCCAGACCTTTTGGACAATGAAGTACCTACTCACTGGCTCTGTCAGTGCCGCG 1483203
Query 172 CGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 218
||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1483204 CGCGTGCGGGCCAGAACATCTAAGGGCATCACAGACCTGTTGTTGCC 1483250
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751999395345
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |