Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq41 277 3e-72 seq3 145 1e-32 seq1 132 9e-29 >seq41 Length=38872 Score = 277 bits (306), Expect = 3e-72 Identities = 177/192 (92%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196 ||||||||||||||||||||||||||||||||||| |||||| ||||| | || |||| Sbjct 3011 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTACTTC--CTTGT 3068 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 ||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 3069 CCGAAAGGTCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTA 3128 Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316 ||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||| Sbjct 3129 TTGCTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCC 3188 Query 317 CTGCCCTTTGTA 328 |||||||||||| Sbjct 3189 CTGCCCTTTGTA 3200 >seq3 Length=1379917 Score = 145 bits (160), Expect = 1e-32 Identities = 140/179 (78%), Gaps = 8/179 (4%) Strand=Plus/Minus Query 100 GATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCG 159 |||||||||||| |||||||||||||||| ||||||||| ||||||| || ||||| Sbjct 410154 GATGGAAGTTTGTGGCAATAACAGGTCTGCGATGCCCTTGTGTGTTCTGAGCAGCACGAA 410095 Query 160 CGCTACACTGACAGA---GCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCT 216 | || | || | | | | ||| | | ||| || |||||| ||||||||| Sbjct 410094 CACTGGAATGGCGGGCTTGACGGCGACCTATTTACC-----CGAAAGGTCCGGGTAATCT 410040 Query 217 TGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAAT 275 |||||||||| ||| || ||||||||||||||||| |||||||||||||||||||||| Sbjct 410039 TGTTAAACTCCGTCATGAAGGGGATAGAGCATTGCAGTTATTGCTCTTCAACGAGGAAT 409981 >seq1 Length=4337333 Score = 132 bits (146), Expect = 9e-29 Identities = 101/118 (86%), Gaps = 6/118 (5%) Strand=Plus/Minus Query 113 GGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACA 172 ||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 1483250 GGCAACAACAGGTCTGTGATGCCCTTAGATGTTCTGGCCCGCACGCGCGCGGCACTGACA 1483191 Query 173 GAGCCAACGA----GTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTC 226 |||||| || || | ||| ||| || |||||||||||||||||||||||||| Sbjct 1483190 GAGCCAGTGAGTAGGTACTTCA--TTGTCCAAAAGGTCTGGGTAATCTTGTTAAACTC 1483135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947199213824