Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10]
83 sequences; 41,590,745 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq41 277 3e-72
seq3 145 1e-32
seq1 132 9e-29
>seq41
Length=38872
Score = 277 bits (306), Expect = 3e-72
Identities = 177/192 (92%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196
||||||||||||||||||||||||||||||||||| |||||| ||||| | || ||||
Sbjct 3011 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTACTTC--CTTGT 3068
Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256
||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 3069 CCGAAAGGTCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTA 3128
Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316
||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||
Sbjct 3129 TTGCTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCC 3188
Query 317 CTGCCCTTTGTA 328
||||||||||||
Sbjct 3189 CTGCCCTTTGTA 3200
>seq3
Length=1379917
Score = 145 bits (160), Expect = 1e-32
Identities = 140/179 (78%), Gaps = 8/179 (4%)
Strand=Plus/Minus
Query 100 GATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCG 159
|||||||||||| |||||||||||||||| ||||||||| ||||||| || |||||
Sbjct 410154 GATGGAAGTTTGTGGCAATAACAGGTCTGCGATGCCCTTGTGTGTTCTGAGCAGCACGAA 410095
Query 160 CGCTACACTGACAGA---GCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCT 216
| || | || | | | | ||| | | ||| || |||||| |||||||||
Sbjct 410094 CACTGGAATGGCGGGCTTGACGGCGACCTATTTACC-----CGAAAGGTCCGGGTAATCT 410040
Query 217 TGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAAT 275
|||||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 410039 TGTTAAACTCCGTCATGAAGGGGATAGAGCATTGCAGTTATTGCTCTTCAACGAGGAAT 409981
>seq1
Length=4337333
Score = 132 bits (146), Expect = 9e-29
Identities = 101/118 (86%), Gaps = 6/118 (5%)
Strand=Plus/Minus
Query 113 GGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACA 172
||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1483250 GGCAACAACAGGTCTGTGATGCCCTTAGATGTTCTGGCCCGCACGCGCGCGGCACTGACA 1483191
Query 173 GAGCCAACGA----GTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTC 226
|||||| || || | ||| ||| || ||||||||||||||||||||||||||
Sbjct 1483190 GAGCCAGTGAGTAGGTACTTCA--TTGTCCAAAAGGTCTGGGTAATCTTGTTAAACTC 1483135
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947199213824
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |